View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_low_13 (Length: 400)
Name: NF20204_low_13
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 36935477 - 36935772
Alignment:
| Q |
17 |
catggctggtctctacactgttatcagtgaactacgttggttgtccaatgtgtttctggttatggcactgatttttgtcgcggttgtgattttgttatat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36935477 |
catggctggtctctacactgttatcagtgaactacgtcggttgtccaatgtgtttctggttatggcactgatttttgtcgccgttgtgattttgttatat |
36935576 |
T |
|
| Q |
117 |
gtgcttcttttccttctatcaccatcaactagcaaccccttgtggtacatttctcattatccatatcnnnnnnnggcatcacgaactgaaagtaaacctg |
216 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36935577 |
gtgcttcttttccttccatcaccatcaactagcaaccccttgcggtacatttctcattatccatatctttttttggcatcacgaactgaaagtaaacctg |
36935676 |
T |
|
| Q |
217 |
atcaag---gtgttaatccttggtcttagtgtaagtgatgtattatggctaagtggggattcattaggtcattgaataagttaacccccctaaatt |
309 |
Q |
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| T |
36935677 |
atcaaggtcgtgttaatccttggtcttagtgtaagtgatgtattatggctaagtggggattcattaggtcattgaataagttaacccccctaaatt |
36935772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 36956335 - 36956542
Alignment:
| Q |
21 |
gctggtctctacactgttatcagtgaactacgttggttgtccaatgtgtttctggttatggcactgatttttgtcgcggttgtgattttgttatatgtgc |
120 |
Q |
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| T |
36956335 |
gctggtctgtacactgttattagtgaacttaattggttggcaaatgtgtttctggttatggctctgatttttgttgcggttgtgatttttttatatatgc |
36956434 |
T |
|
| Q |
121 |
ttcttttccttctatcaccatcaactagcaaccccttgtggtacatttctcattatccatatcnnnnnnnggcatcacgaactgaaagtaaacctgatca |
220 |
Q |
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| T |
36956435 |
ttcttttccttccatcatcatcaactagcaagccattgcggtacatttctcactacccttttcttttcttggcatcacaaactgaaagtaaacctgatca |
36956534 |
T |
|
| Q |
221 |
aggtgtta |
228 |
Q |
| |
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|| ||||| |
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| T |
36956535 |
agatgtta |
36956542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 36948259 - 36948407
Alignment:
| Q |
21 |
gctggtctctacactgttatcagtgaactacgttggttgtccaatgtgtttctggttatggcactgatttttgtcgcggttgtgattttgttatatgtgc |
120 |
Q |
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||||| ||||||||||||||||||||||| ||||||| | |||||||||||||||||| || |||||||||| | ||||| |||| | |||||| ||| |
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| T |
36948259 |
gctggcctctacactgttatcagtgaacttacttggttggcaaatgtgtttctggttatgacattgatttttgttgtggttgagattcttttatatatgc |
36948358 |
T |
|
| Q |
121 |
ttcttttccttctatcaccatcaactagcaaccccttgtggtacatttc |
169 |
Q |
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| |||||||||| |||| |||||||||||| || ||| |||||||||| |
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| T |
36948359 |
tccttttccttccatcatcatcaactagcataccattgcggtacatttc |
36948407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 37079463 - 37079404
Alignment:
| Q |
18 |
atggctggtctctacactgttatcagtgaactacgttggttgtccaatgtgtttctggtt |
77 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||| |
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| T |
37079463 |
atggctggactctacactgttatcagtgaacttacttggttggcaaatgtgtttctggtt |
37079404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 37069704 - 37069672
Alignment:
| Q |
17 |
catggctggtctctacactgttatcagtgaact |
49 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
37069704 |
catgactggtctctacactgttatcagtgaact |
37069672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 12493493 - 12493290
Alignment:
| Q |
17 |
catggctggtctctacactgttatcagtgaactacgttggttgtccaatgtgtttctggttatggcactgatttttgtcgcggttgtgattttgttatat |
116 |
Q |
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||||||| |||| ||||||||||| |||||||| ||||||||| ||||||| ||||||||||||| |||||||| | |||||||||||| ||||||| |
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| T |
12493493 |
catggctagtctttacactgttattagtgaacttacttggttgtcaaatgtgtctctggttatggcattgatttttattgcggttgtgattgcgttatat |
12493394 |
T |
|
| Q |
117 |
gtgcttcttttccttctatcaccatcaactagcaaccccttgtggtacatttctcattatccatatcnnnnnnnggcatcacgaactgaaagtaaacctg |
216 |
Q |
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|||| |||||||| |||| ||||||||||||| || ||| ||||||||||||| || | |||| ||||||||||||||||||||||| || |
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| T |
12493393 |
atgctcagtttccttccatcatcatcaactagcaagccattgcggtacatttctcactacctttatctttttttggcatcacgaactgaaagtaaacatg |
12493294 |
T |
|
| Q |
217 |
atca |
220 |
Q |
| |
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|||| |
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|
| T |
12493293 |
atca |
12493290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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