View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_low_17 (Length: 347)
Name: NF20204_low_17
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 79 - 336
Target Start/End: Complemental strand, 19042706 - 19042448
Alignment:
| Q |
79 |
ggtgtaatttcttgtttacttcagaccttcaacattgctctggatatgtattgaaaagatgctgtaaaaccaggccccacctaattacttgctgatgcct |
178 |
Q |
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| T |
19042706 |
ggtgttatttcttgtttatttcaaacctccaacattgctctggatatgtattgaaaagatgctgtaactccagaccccacgtaattacttgctgatgcct |
19042607 |
T |
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| Q |
179 |
ttttaatttatttcccttgtatgatcctctaaaatgtccatttgttaactcagattctaataaacatggattcgatattagcagtggttgaatttgaaaa |
278 |
Q |
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| T |
19042606 |
ttttaattaatttccattgtatgatcctct-aaatgcccatttgttaacttagattctaataaatatggattgagtgttagaagtggttgaacttgaaaa |
19042508 |
T |
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| Q |
279 |
caatgagcttaatatta--atatctctctaaattttatattttaatgtatcttatttcat |
336 |
Q |
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| T |
19042507 |
caatgaacttaatcttaatatatctctctaaattttatatcttaatgtatcctatttcat |
19042448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 79 - 336
Target Start/End: Original strand, 20711930 - 20712188
Alignment:
| Q |
79 |
ggtgtaatttcttgtttacttcagaccttcaacattgctctggatatgtattgaaaagatgctgtaaaaccaggccccacctaattacttgctgatgcct |
178 |
Q |
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| T |
20711930 |
ggtgttatttcttgtttatttcaaacctccaacattgctctggatatgtattgaaaagatgctgtaactccagaccccacgtaattacttgctgatgcct |
20712029 |
T |
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| Q |
179 |
ttttaatttatttcccttgtatgatcctctaaaatgtccatttgttaactcagattctaataaacatggattcgatattagcagtggttgaatttgaaaa |
278 |
Q |
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| T |
20712030 |
ttttaattaatttccattgtatgatcctct-aaatgcccatttgttaacttagattctaataaatatggattgagtgttagaagtggttgaacttgaaaa |
20712128 |
T |
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| Q |
279 |
caatgagcttaatatta--atatctctctaaattttatattttaatgtatcttatttcat |
336 |
Q |
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| T |
20712129 |
caatgaacttaatcttaatatatctctctaaattttatatcttaatgtatcctatttcat |
20712188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 19042811 - 19042751
Alignment:
| Q |
15 |
caatattcatatctccgattggtttgtacaatatcttgtttggcattgatgtaaccatgtt |
75 |
Q |
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| T |
19042811 |
caatattcatatctccgattggtttgtacaatttcttgtttgacattgatgtaaccatgtt |
19042751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 20711825 - 20711885
Alignment:
| Q |
15 |
caatattcatatctccgattggtttgtacaatatcttgtttggcattgatgtaaccatgtt |
75 |
Q |
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| T |
20711825 |
caatattcatatctccgattggtttgtacaatttcttgtttgacattgatgtaaccatgtt |
20711885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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