View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_low_18 (Length: 343)
Name: NF20204_low_18
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 27490063 - 27489741
Alignment:
| Q |
1 |
ttgggaatcacaattagaacaaatgcatgtgcatttcatttgtcacttgttatggggcttt-atgagagagnnnnnnnngcatgaatatgtgcatgttgt |
99 |
Q |
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| T |
27490063 |
ttgggaatcccaattagaacaaatgcatgtgcatttcatttgtcacttgttatgtggcttttatgagagaaaaaaaaa--catgaatatgtgcatgttgt |
27489966 |
T |
|
| Q |
100 |
ttccaaaatgttacttataaatagaggtccactttatgcttatgacatcacaacataacatagcaaataaagtgcaacttcctctgttttctcctctgtt |
199 |
Q |
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| T |
27489965 |
ttccaaaatgttacttataaatagaggttcactttatgcttatgacatcacaacataacatagcaaataaagtgtaacttcctctgttttctcctctgtt |
27489866 |
T |
|
| Q |
200 |
tcttttctattgctccaaagcttagaatggcacaccaagaattttctattgctctagtgattctagttgttttgtgtattaacatgaatttgcaaggtgt |
299 |
Q |
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| T |
27489865 |
tcttttctattgctccaaagcttagaatggcacaccaagaattttctattgctctagtgattctagttgttttgtgtattaacatgaatttgcaaggtgt |
27489766 |
T |
|
| Q |
300 |
tatagctgattatggtggttgggag |
324 |
Q |
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| T |
27489765 |
tatagctgattatggtggttgggag |
27489741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 81 - 324
Target Start/End: Complemental strand, 27478494 - 27478252
Alignment:
| Q |
81 |
atgaatatgtgcatgttgtttccaaaatgttacttataaatagaggtccactttatgcttatgacatcacaacataacatagcaaataaagtgcaacttc |
180 |
Q |
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| T |
27478494 |
atgaatatgtgcatgttgttt--aaaatgttacttataaatagaggtctattttaagcttatgacatcacaacata-----gcaaacaaagtgcaacttt |
27478402 |
T |
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| Q |
181 |
ctctgttttctcctctgtttcttttctatt------gctccaaagcttagaatggcacaccaagaattttctattgctctagtgattctagttgttttgt |
274 |
Q |
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| T |
27478401 |
tcctattttcttctctgtttcttttctatcataatggctcagaagcttagaatggcacaccaagaaatttctattgctctagtgattctagttgttttgt |
27478302 |
T |
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| Q |
275 |
gtattaacatgaatttgcaaggtgttatagctgattatggtggttgggag |
324 |
Q |
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| T |
27478301 |
gtattaacatgaatatgcaaggagctatagctgactatggtggttgggag |
27478252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 27478566 - 27478516
Alignment:
| Q |
11 |
caattagaacaaatgcatgtgcatttcatttgtcacttgttatggggcttt |
61 |
Q |
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| T |
27478566 |
caattagaacaaacgcatgtgcaatttatttgtcacttgttatgtggcttt |
27478516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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