View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_low_19 (Length: 339)
Name: NF20204_low_19
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_low_19 |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 34 - 329
Target Start/End: Original strand, 6672393 - 6672684
Alignment:
| Q |
34 |
tcatcttcgtcttgcttttgctgaggttaatccagaacacgattcagtcaggtagatttcatcacatatctatctaataccattcattctatccttatca |
133 |
Q |
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| T |
6672393 |
tcatcttcgtcttgcttttgctgaggttaatccagaacacgattcaatcaggtagattccatcacatatctatctaataccaatcattctatccttatca |
6672492 |
T |
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| Q |
134 |
tgttgttaaaaatctcaatttctgttcttgttactagctgttatagcagagcaacattattaactttttcttgaaggtgttagtattgttttctgatttc |
233 |
Q |
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| T |
6672493 |
tattgttgaaaatctcaatttctgttcttgttactagctgttat-gcagagcaacatta---actttttctttaaggtgttagtattgttttctgatttc |
6672588 |
T |
|
| Q |
234 |
aaatcttaatttttgttaatgttgctagttgctgtagcagagcaacattaagagcaatattagcttttgtttgaggtgttagtattcattcctatg |
329 |
Q |
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| T |
6672589 |
aaatcttaatttttgttaatgttgctatctgctgtagcagagcaacattaagagcaatattagcttttgtttgaggtgttagtattcattcctatg |
6672684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 324
Target Start/End: Complemental strand, 12592912 - 12592727
Alignment:
| Q |
139 |
ttaaaaatctcaatttctgttcttgttactagctgttatagcagagcaacattattaactttttcttgaaggtgttagtattgttttc--tgatttcaaa |
236 |
Q |
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|||||||||||||||| ||| |||| ||||||| | ||||||||||||||| ||||| ||| ||||||||| ||||||||| | |||| ||| |
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| T |
12592912 |
ttaaaaatctcaattttcgttactgttgctagctgctgtagcagagcaacattgg---cttttgctttaaggtgttattattgtttttatttatttaaaa |
12592816 |
T |
|
| Q |
237 |
tcttaatttttgttaatgttgctagttgctgtagcagagcaacattaagagcaatattagcttttg-tttgaggtgttagtattcattc |
324 |
Q |
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| T |
12592815 |
tctcaatttctgttaatgttgctagctgatgtagcagagcaacatgaagggcaacattagcttttgctttgaggtgttagtattcattc |
12592727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 15690603 - 15690527
Alignment:
| Q |
34 |
tcatcttcgtcttgcttttgctgaggttaatccagaacacgattcagtcaggtagatttcatcacatatctatctaa |
110 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||||| | ||||||| |
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| T |
15690603 |
tcatcttcgtcttgcttttgatgaggttaactcagaacacgattcagtcgggtagattccatcacatgtttatctaa |
15690527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 295
Target Start/End: Complemental strand, 30822539 - 30822383
Alignment:
| Q |
139 |
ttaaaaatctcaatttctgttcttgttactagctgttatagcagagcaacattattaactttttcttga--aggtgttagtattgttttctg-atttcaa |
235 |
Q |
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||||||||||||||||||||| |||| |||| || | |||||| ||||||| ||||||||| | |||||||||||||||||| | |||| || |
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| T |
30822539 |
ttaaaaatctcaatttctgttaatgttgctaggtgctgtagcagcacaacattgg---ctttttctttataaggtgttagtattgttttttctatttaaa |
30822443 |
T |
|
| Q |
236 |
atcttaatttttgttaatgttgctagttgctgtagcagagcaacattaagagcaatatta |
295 |
Q |
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|| ||||||| ||||||||||||||| || |||||||||||||||| ||| |||| |||| |
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| T |
30822442 |
attttaatttctgttaatgttgctagctgatgtagcagagcaacatgaagggcaacatta |
30822383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 295
Target Start/End: Complemental strand, 30813209 - 30813120
Alignment:
| Q |
207 |
aaggtgttagtattgtttt-ctgatttcaaatcttaatttttgttaatgttgctagttgctgtagcagagcaacattaagagcaatatta |
295 |
Q |
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| T |
30813209 |
aaggtgttagtattgtttttcctatttaaaatttcaatttctgttaatgttgctagctgatgtagcagagcaacatgaagggcaacatta |
30813120 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 30813128 - 30813077
Alignment:
| Q |
275 |
gcaacattaagagcaatattagcttttg-tttgaggtgttagtattcattcc |
325 |
Q |
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| T |
30813128 |
gcaacattaatagaaacattagcttttgatttgaggtgttagtattcattcc |
30813077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 139 - 283
Target Start/End: Original strand, 18719 - 18860
Alignment:
| Q |
139 |
ttaaaaatctcaatttctgttcttgttactagctgttatagcagagcaacattattaactttttcttgaaggtgttagtattgttttctgatttcaaatc |
238 |
Q |
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|||||||||||| |||||||| |||| ||||||| |||||||||||||||||| ||||| ||| |||||| ||||||||||||||||||| ||||| |
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| T |
18719 |
ttaaaaatctcagtttctgttaatgttgctagctgctatagcagagcaacattag---cttttcctttaaggtgatagtattgttttctgatttaaaatc |
18815 |
T |
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| Q |
239 |
ttaatttttgttaatgttgctagttgctgtagcagagcaacatta |
283 |
Q |
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| T |
18816 |
tcaatttatgttattgttgctagctcctgtagcagagcaacatta |
18860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 295
Target Start/End: Complemental strand, 27811812 - 27811659
Alignment:
| Q |
139 |
ttaaaaatctcaatttctgttcttgttactagctgttatagcagagcaacattattaactttttcttgaaggtgttagtattgttttctgatttcaaatc |
238 |
Q |
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||||||||||||||||| ||| |||| |||| || | |||||| |||||||| ||||| ||| ||||||||||||||||||| | |||| |||| |
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| T |
27811812 |
ttaaaaatctcaatttccgttaatgtttctaggtgctgtagcagcgcaacattgg---cttttgctttaaggtgttagtattgtttttttatttaaaatt |
27811716 |
T |
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| Q |
239 |
ttaatttttgttaatgttgctagttgctgtagcagagcaacattaagagcaatatta |
295 |
Q |
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| T |
27811715 |
tcaatttctgttaatgttgctagctgatgtagcagagcaacatgaagggcaacatta |
27811659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 16775034 - 16775084
Alignment:
| Q |
74 |
gattcagtcaggtagatttcatcacatatctatctaataccattcattcta |
124 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
16775034 |
gattcagtcaggtagattccatcacatatctatctaacaccattcattcta |
16775084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 9631285 - 9631341
Alignment:
| Q |
71 |
cacgattcagtcaggtagatttcatcacatatctatctaataccattcattctatcc |
127 |
Q |
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| T |
9631285 |
cacgattcagtaaggtagattccatcacatatctatctaacactattcattctatcc |
9631341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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