View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20204_low_2 (Length: 661)

Name: NF20204_low_2
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20204_low_2
NF20204_low_2
[»] chr5 (22 HSPs)
chr5 (88-661)||(8643347-8643921)
chr5 (312-661)||(8635921-8636280)
chr5 (149-290)||(8677481-8677623)
chr5 (154-503)||(8527857-8528207)
chr5 (18-94)||(8643942-8644018)
chr5 (125-257)||(8636291-8636422)
chr5 (379-502)||(8640449-8640573)
chr5 (312-451)||(8677342-8677482)
chr5 (430-522)||(9002262-9002354)
chr5 (413-512)||(9075307-9075406)
chr5 (432-525)||(8420392-8420485)
chr5 (154-298)||(8534627-8534772)
chr5 (156-236)||(8640670-8640750)
chr5 (379-496)||(8534438-8534558)
chr5 (159-237)||(8548782-8548860)
chr5 (430-506)||(8549071-8549148)
chr5 (152-192)||(1601056-1601096)
chr5 (618-661)||(8545351-8545394)
chr5 (592-661)||(8640251-8640317)
chr5 (178-223)||(9075344-9075389)
chr5 (629-661)||(8549193-8549225)
chr5 (477-509)||(27458082-27458114)
[»] chr4 (1 HSPs)
chr4 (162-503)||(9442024-9442360)
[»] chr7 (5 HSPs)
chr7 (430-605)||(48362758-48362933)
chr7 (430-607)||(35777264-35777444)
chr7 (156-297)||(35777467-35777608)
chr7 (152-218)||(48362518-48362584)
chr7 (178-218)||(48362777-48362817)
[»] chr1 (3 HSPs)
chr1 (379-470)||(5129819-5129911)
chr1 (444-497)||(26324948-26325001)
chr1 (267-305)||(26324397-26324435)
[»] chr8 (2 HSPs)
chr8 (606-661)||(44438654-44438709)
chr8 (450-516)||(44438492-44438558)


Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 88 - 661
Target Start/End: Complemental strand, 8643921 - 8643347
Alignment:
Q  88 cttcctattttggtattttatttggagaaaggaaaacttgttaagtaataagtagtttttcaagattattccctaatattgttttaattgatataggtgt 187  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8643921 cttcctattttggcattttatttggagaaaggaaaacttgttaagtaataagtagtttttcaagattattccttaatattgttttaattgatataggtgt 8643822  T
Q  188 gcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaacaagttctttgagatttggaattacacgttcttcatcatcttatggtgactt 287  Q
    ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8643821 gcaaatgtcaaattggaagaagaaaatgaagttctttccttgtcacaacaagttctttgagatttggaattacacgttcttcatcatcttatggtgactt 8643722  T
Q  288 gattaatatattttcctcagtctaatggggaagaattcgatgatgagcctgtatattatgaaaagtacgtctcttttcacattgatgaggatattctgac 387  Q
    |||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8643721 gattaatatattttcctcagcctgatggtgaagaattcgatgatgagcctgtatattatgaaaagtacgtctcttttcacattgatgaggatattctgac 8643622  T
Q  388 ccttgcatactacaattttaggcacttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatg 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8643621 ccttgcatactacaattttaggcacttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaaaaaaatg 8643522  T
Q  488 aagatcttgaatgatgacttgacaagtaccctcctccttctgtgagaggcttttgacg-aagagtataactaaaaagaaggatttttcatacaaaaggaa 586  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||    
T  8643521 aagatcttgaatgatgacttgacaagtaccctcctccttctgtgagaggcttttgatgaaagagtacaactaaaaagaaggatttttcatacaaaaggaa 8643422  T
Q  587 gggttatgctaaatcacaattatcatatttagaaaagaaatgcatatctcattttaggatgcaaatgatgtcttt 661  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8643421 gggttatgctaaatcacaattatcatatttagaaaaaaaatgcatatctcattttaggatgcaaatgatgtcttt 8643347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 312 - 661
Target Start/End: Complemental strand, 8636280 - 8635921
Alignment:
Q  312 atggggaagaattcgatgatgagcctgtatattatgaaaagtacgtctcttttcacattgatgaggatattctgacccttgcatactacaattttaggca 411  Q
    |||| ||||||||||  ||||||||  ||| ||| || |||| |||||||||||||||||||| ||||| | | |||||||| || |||||||||||| |    
T  8636280 atggtgaagaattcggcgatgagcccatatcttaagagaagtgcgtctcttttcacattgatggggatactgtaacccttgcttaatacaattttaggta 8636181  T
Q  412 c-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgac 510  Q
    | ||||| ||||||| ||  |||||||||| |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||| || ||| |    
T  8636180 cattactaaggctctgttacgtaatattggcgttattttatataggtatgcaaattttaaattaagtgaagaaaatgaagatcttgaatgacgatttggc 8636081  T
Q  511 aagtaccctcctccttctgtga-gaggcttttga-----cgaagagtataactaaaaagaaggatttttcatacaaaaggaagggttatgctaaatcaca 604  Q
    |||| | ||||||||||   ||  ||||||||||      |||||||| ||||||||| ||||| ||||||||||  ||||||| |||||||||||||||    
T  8636080 aagtgctctcctccttcgaggacaaggcttttgatgaagagaagagtacaactaaaaacaaggaattttcatacagcaggaaggtttatgctaaatcaca 8635981  T
Q  605 attatcatattt---agaaaagaaatgcatatctcattttaggatgcaaatgatgtcttt 661  Q
    ||||| ||||||   |||||| ||||||||||||||||||||||||||||||||||||||    
T  8635980 attatgatatttgaaagaaaaaaaatgcatatctcattttaggatgcaaatgatgtcttt 8635921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 149 - 290
Target Start/End: Complemental strand, 8677623 - 8677481
Alignment:
Q  149 aagattattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaac-aagttctttga 247  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||  |||||||||||||||||||||||||| |||| || ||  ||||    
T  8677623 aagattattcgctaatattgttttaattgatataggtgtgcaaatgttgaattgcgggaagaaaatgaagttctttccttgtcacaacaaatttgattga 8677524  T
Q  248 gatttggaattacacgttcttcatcatcttatggtgacttgat 290  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  8677523 gatttggaattacacattcttcatcatcttatggtgacttgat 8677481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 154 - 503
Target Start/End: Complemental strand, 8528207 - 8527857
Alignment:
Q  154 tattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaacaagttctttgagatttg 253  Q
    ||||||| |||||||||||||||  ||||||||||||||  | |||||||  | |||||| || ||||||||  ||||||||||  || ||||||| |||    
T  8528207 tattccccaatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagacttg 8528108  T
Q  254 gaattacacgttcttcatcatcttatggtgacttgattaatatattttcctcagt--ctaatggggaagaattcgatgatgagcctgtatattatgaaaa 351  Q
     || | || | | ||||||||||||| |||||||||| ||||||| ||||||  |  || |||| ||||| || |  || |||||||  |  || ||| |    
T  8528107 aaagttcatgcttttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaagagtttggcgaagagcctgcttcctaagaaga 8528008  T
Q  352 gtacgtctcttttcacattgatgaggatattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttatttta 450  Q
    ||||||||  ||||  ||||||  |  ||||||||||| ||| || |||||||||||| |  |||||||| || | || |||||||||||||||||||||    
T  8528007 gtacgtctgctttcgtattgattgg--tattctgacccctgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttatttta 8527910  T
Q  451 tataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatg 503  Q
    ||||||||||||||| |||||||  |||||||| |||||||||||||||||||    
T  8527909 tataggtgtgcaaatattaaattgcatgaagaagatgaagatcttgaatgatg 8527857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 8644018 - 8643942
Alignment:
Q  18 tgattgacaaattgaatttgatgctcccttacaaatcatacaaaccctttcccctaaatatatatgtgagcttccta 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8644018 tgattgacaaattgaatttgatgctcccttacaaatcatacaaaccctttcccctaaatatatatgtgagcttccta 8643942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 125 - 257
Target Start/End: Complemental strand, 8636422 - 8636291
Alignment:
Q  125 ttgttaagtaataagtagtttttcaagattattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttcttt 224  Q
    |||||||| ||| | |||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||  ||||||  |||||||||||||||||||    
T  8636422 ttgttaagcaatcaatagtttttta-gattattccctcatattgttttgattgatataggtgtgcaaatgttgaattgccggaagaaaatgaagttcttt 8636324  T
Q  225 ccttgtctcaacaagttctttgagatttggaat 257  Q
    ||||||||||||||  | |||||||||||||||    
T  8636323 ccttgtctcaacaaactgtttgagatttggaat 8636291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 379 - 502
Target Start/End: Complemental strand, 8640573 - 8640449
Alignment:
Q  379 tattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatat 477  Q
    |||| |||||| ||| |||||||||||||||||| |||||||| || | ||| |||  ||||||||||||||||||||||||||||| ||||||||   |    
T  8640573 tattttgacccctgcttactacaattttaggcacgttacttagactttgtttcgtaccattggtgttattttatataggtgtgcaaaatttaaattgcgt 8640474  T
Q  478 gaagaaaatgaagatcttgaatgat 502  Q
    |||||||||||||||||||||||||    
T  8640473 gaagaaaatgaagatcttgaatgat 8640449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 312 - 451
Target Start/End: Complemental strand, 8677482 - 8677342
Alignment:
Q  312 atggggaagaattcgatgatgagcctgtatattatgaaaagtacgtctcttttcacattgatgaggatattctgacccttgcatactacaattttaggca 411  Q
    |||| |||||||| | ||| |||||  ||||| | ||||||||||||||||||||| |||||| | ||||||||| || | | ||||||||||||||| |    
T  8677482 atggtgaagaatttggtgacgagcccatatatgaagaaaagtacgtctcttttcactttgatgggaatattctgatccgtccttactacaattttaggaa 8677383  T
Q  412 -cttacttaggctcttttttgtaatattggtgttattttat 451  Q
      |||||| |||||| |||||||||||||||||||||||||    
T  8677382 tgttacttgggctctgttttgtaatattggtgttattttat 8677342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 430 - 522
Target Start/End: Complemental strand, 9002354 - 9002262
Alignment:
Q  430 tgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtaccctcct 522  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||   ||||||||||||||||||||||||| |||||||| | |||||||||    
T  9002354 tgtaatattggtgttgttttgtataggtgtgcaaagtttaaattgcgtgaagaaaatgaagatcttgaatgacgacttgactattaccctcct 9002262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 413 - 512
Target Start/End: Original strand, 9075307 - 9075406
Alignment:
Q  413 ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaa 512  Q
    |||||||| || | || ||||||| || |||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||| ||| ||||    
T  9075307 ttacttagactttgttgtgtaatactgttgttattttatataggtgtgcaaattttaaattgcatgaagagaatgaagatcttgaatgatgtcttaacaa 9075406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 432 - 525
Target Start/End: Complemental strand, 8420485 - 8420392
Alignment:
Q  432 taatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtaccctcctcct 525  Q
    ||||| |||||||||||||||||||| |||||| ||  |||  |  ||||||||| |||||||||||||||||||||||||||| |||||||||    
T  8420485 taatactggtgttattttatataggtttgcaaagttagaatcgtgcgaagaaaataaagatcttgaatgatgacttgacaagtatcctcctcct 8420392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 154 - 298
Target Start/End: Complemental strand, 8534772 - 8534627
Alignment:
Q  154 tattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttg---tctcaacaagttctttgagat 250  Q
    ||||||| ||||||||||||||| |||||||||||||||  | |||||||  |||||||| ||||||||||| |||   ||||||| | || |||||||     
T  8534772 tattccccaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaaaggaagttctttctttgcgatctcaacga-ttgtttgagac 8534674  T
Q  251 ttggaattacacgttcttcatcatcttatggtgacttgattaatatat 298  Q
    || ||| | || ||| |||||||||||||||||||||||| |||||||    
T  8534673 tt-gaagttcatgtttttcatcatcttatggtgacttgataaatatat 8534627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 8640750 - 8640670
Alignment:
Q  156 ttccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaac 236  Q
    ||||||||||||||||||||| |||||||||||||||  | ||||||   ||||||||||||||| |||||||||||||||    
T  8640750 ttccctaatattgttttaatttatataggtgtgcaaagtttaaattgggagaagaaaatgaagttttttccttgtctcaac 8640670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 379 - 496
Target Start/End: Complemental strand, 8534558 - 8534438
Alignment:
Q  379 tattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaa--ttttaaattat 475  Q
    ||||||||||||||| || |||||||||||| |  |||||||| ||   |  |||||||||||||||||||||||||||||| ||||  |||||| ||      
T  8534558 tattctgacccttgcttattacaattttaggtatgttacttagacttcgtcatgtaatattggtgttattttatataggtgttcaaattttttaatttgc 8534459  T
Q  476 atgaagaaaatgaagatcttg 496  Q
    |||||||||||||||||||||    
T  8534458 atgaagaaaatgaagatcttg 8534438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 8548782 - 8548860
Alignment:
Q  159 cctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaaca 237  Q
    |||||||||||||||||| ||||||||||| |||  | ||||| || |||||||| |||||| |||| |||||||||||    
T  8548782 cctaatattgttttaatttatataggtgtgtaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaaca 8548860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 430 - 506
Target Start/End: Original strand, 8549071 - 8549148
Alignment:
Q  430 tgtaatattggtgttattttatataggtgtgcaaa-ttttaaattatatgaagaaaatgaagatcttgaatgatgact 506  Q
    |||||||||||||||||||| |||||| ||||||| ||| |||||  || |||||||  |||||||||||||||||||    
T  8549071 tgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatgact 8549148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 1601056 - 1601096
Alignment:
Q  152 attattccctaatattgttttaattgatataggtgtgcaaa 192  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  1601056 attattcccaaatattgttttaatttatataggtgtgcaaa 1601096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 661
Target Start/End: Original strand, 8545351 - 8545394
Alignment:
Q  618 gaaaagaaatgcatatctcattttaggatgcaaatgatgtcttt 661  Q
    ||||| |||| || ||||||||||||||||||||||||||||||    
T  8545351 gaaaaaaaatacaaatctcattttaggatgcaaatgatgtcttt 8545394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 661
Target Start/End: Complemental strand, 8640317 - 8640251
Alignment:
Q  592 atgctaaatcacaattatcatatttagaaaagaaatgcatatctcattttaggatgcaaatgatgtcttt 661  Q
    ||||||||||| |||||| ||||||  ||||   ||||||||||||||||||||||||||  ||||||||    
T  8640317 atgctaaatcagaattatgatatttcaaaaa---atgcatatctcattttaggatgcaaacaatgtcttt 8640251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 9075344 - 9075389
Alignment:
Q  178 atataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctt 223  Q
    |||||||||||||||| | |||||||||||||| ||||||| ||||    
T  9075344 atataggtgtgcaaattttaaattgcatgaagagaatgaagatctt 9075389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 629 - 661
Target Start/End: Original strand, 8549193 - 8549225
Alignment:
Q  629 catatctcattttaggatgcaaatgatgtcttt 661  Q
    |||||||| ||||||||||||||||||||||||    
T  8549193 catatctctttttaggatgcaaatgatgtcttt 8549225  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 477 - 509
Target Start/End: Original strand, 27458082 - 27458114
Alignment:
Q  477 tgaagaaaatgaagatcttgaatgatgacttga 509  Q
    ||||||||||||||||||||||||| |||||||    
T  27458082 tgaagaaaatgaagatcttgaatgacgacttga 27458114  T

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Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 162 - 503
Target Start/End: Complemental strand, 9442360 - 9442024
Alignment:
Q  162 aatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaacaagttctttgagatttggaattaca 261  Q
    |||||||||||||||  ||||||||||||||  | |||||||  | |||||| || ||||||||  ||||||||       ||||||||||| || | ||    
T  9442360 aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaag------tttgagatttgaaagttca 9442267  T
Q  262 cgttcttcatcatcttatggtgacttgattaatatattttcctcagt--ctaatggggaagaattcgatgatgagcctgtatattatgaaaagtacgtct 359  Q
     | | ||||||||||||| |||||||||| ||||||| ||||||  |  || |||| ||||| || | ||| |||||||  |  || ||| |||||||||    
T  9442266 tgcttttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtct 9442167  T
Q  360 cttttcacattgatgaggatattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtg 458  Q
      ||||  ||||||  |  ||||||||||||||| || |||||||||||| |  |||||||| || | || |||||||||||||||||||||||||||||    
T  9442166 gctttcgtattgattgg--tattctgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttattttatataggtg 9442069  T
Q  459 tgcaaattttaaattatatgaagaaaatgaagatcttgaatgatg 503  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||    
T  9442068 tgcaaatattaaattacatgaagaaaatgaagatcttgaatgatg 9442024  T

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Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 430 - 605
Target Start/End: Original strand, 48362758 - 48362933
Alignment:
Q  430 tgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtaccctcctccttctg 529  Q
    ||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| ||||||||  ||||||| |||| || |||| | |    
T  48362758 tgtaatattcgtgttattt-atataggtgtgcaaatattaaattacatgaagaaaatgaagatctcgaatgatggtttgacaaataccttcttcctccgg 48362856  T
Q  530 t-gagaggcttttgacgaagagtataactaaaaagaaggatttttcatacaaaaggaagggttatgctaaatcacaa 605  Q
    | | ||||| ||||  |||||||| |||| | |||| ||| ||| ||||||   || ||||||||| ||||||||||    
T  48362857 tggtgaggcctttggtgaagagtacaactgataagagggaatttccatacactgggcagggttatgttaaatcacaa 48362933  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 430 - 607
Target Start/End: Complemental strand, 35777444 - 35777264
Alignment:
Q  430 tgtaatattggtgttattttatataggtgtgcaaa-ttttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtaccctc-ctccttc 527  Q
    |||||||||||||||||||| |||||  ||||||| ||||||| |  |  ||| ||||||||||||||||||||||||||||||||| |||| |||||||    
T  35777444 tgtaatattggtgttattttgtatagtcgtgcaaagttttaaactgcagtaagtaaatgaagatcttgaatgatgacttgacaagtatcctctctccttc 35777345  T
Q  528 tgt-gagaggcttttgacgaagagtataactaaaaagaaggatttttcatacaaaaggaagggttatgctaaatcacaatt 607  Q
     || | || ||||||| ||||||||| |||||  | |||| | ||| ||||||  ||| | || |||||||||||||||||    
T  35777344 ggtggtgacgcttttggcgaagagtacaactattatgaagtaatttccatacagtaggcatggctatgctaaatcacaatt 35777264  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 156 - 297
Target Start/End: Complemental strand, 35777608 - 35777467
Alignment:
Q  156 ttccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaagttctttccttgtctcaacaagttctttgagatttgg- 254  Q
    ||||||||||||||| | ||  |||||||||||||||    ||||||   ||||||| ||||||||||| |||| ||||| || || ||||||| ||||     
T  35777608 ttccctaatattgttgtcatgtatataggtgtgcaaagtataaattgtgggaagaaagtgaagttcttttcttggctcaagaatttgtttgagacttggt 35777509  T
Q  255 aattacacgttcttcatcatcttatggtgacttgattaatata 297  Q
    || || ||||||||||||||||||| |||||||||| ||||||    
T  35777508 aagtatacgttcttcatcatcttat-gtgacttgataaatata 35777467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 48362518 - 48362584
Alignment:
Q  152 attattccctaatattgttttaattgatataggtgtgcaaatgtcaaattgcatgaagaaaatgaag 218  Q
    ||||||||  ||||||| ||||||| |||||||||||||||  | |||||||| |||||||| ||||    
T  48362518 attattcctgaatattggtttaatttatataggtgtgcaaagtttaaattgcaggaagaaaaggaag 48362584  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 48362777 - 48362817
Alignment:
Q  178 atataggtgtgcaaatgtcaaattgcatgaagaaaatgaag 218  Q
    |||||||||||||||| | ||||| ||||||||||||||||    
T  48362777 atataggtgtgcaaatattaaattacatgaagaaaatgaag 48362817  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 379 - 470
Target Start/End: Complemental strand, 5129911 - 5129819
Alignment:
Q  379 tattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaa 470  Q
    ||||||||| | ||| || ||||||||||||||| ||| ||||||  | ||  ||||||||||| ||||||||||||||||||||||||||||    
T  5129911 tattctgactcctgcttagtacaattttaggcacattatttaggccttgttacgtaatattggtcttattttatataggtgtgcaaattttaa 5129819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 26324948 - 26325001
Alignment:
Q  444 tattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttga 497  Q
    ||||||||||||||||||||| || || ||  ||||||||||||||||||||||    
T  26324948 tattttatataggtgtgcaaaattgaatttgcatgaagaaaatgaagatcttga 26325001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 26324397 - 26324435
Alignment:
Q  267 ttcatcatcttatggtgacttgattaatatattttcctc 305  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  26324397 ttcatcatcttatggtgacttgataaatatatcttcctc 26324435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 661
Target Start/End: Original strand, 44438654 - 44438709
Alignment:
Q  606 ttatcatatttagaaaagaaatgcatatctcattttaggatgcaaatgatgtcttt 661  Q
    |||| ||||||| |||| |||| || |||||||||||||| |||||||||||||||    
T  44438654 ttatgatatttaaaaaaaaaatacacatctcattttaggaggcaaatgatgtcttt 44438709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 450 - 516
Target Start/End: Original strand, 44438492 - 44438558
Alignment:
Q  450 atataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtac 516  Q
    |||||||| |||||||||||||||    ||| ||| |||||||| | ||||||||||||||||||||    
T  44438492 atataggtctgcaaattttaaattgcgagaaaaaagtgaagatcgtaaatgatgacttgacaagtac 44438558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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