View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_low_21 (Length: 307)
Name: NF20204_low_21
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 43026277 - 43026176
Alignment:
| Q |
11 |
cacagatcagacaccatatacttttttatcaatagggaattgaactggtatcttatcctagagcttacaacactaattactcacattgtgccccaccatt |
110 |
Q |
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| T |
43026277 |
cacagatcagacaccatatacttttttatcaataggaaattgaactggtatcttatcctagagcatacaacactaattactcacattgtgcaccaccatt |
43026178 |
T |
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| Q |
111 |
tg |
112 |
Q |
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|| |
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| T |
43026177 |
tg |
43026176 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 43026169 - 43026118
Alignment:
| Q |
157 |
tatggtataaattataaaaatgaatgtttcaaaacaatcgtc-aacatttgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43026169 |
tatggtataaattataaaaatgaatgtttcaaaacaatcgtctaacatttgt |
43026118 |
T |
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