View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20204_low_29 (Length: 252)

Name: NF20204_low_29
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20204_low_29
NF20204_low_29
[»] chr6 (17 HSPs)
chr6 (1-182)||(1822191-1822372)
chr6 (1-215)||(1838931-1839143)
chr6 (101-237)||(6465229-6465366)
chr6 (101-237)||(1831934-1832071)
chr6 (120-237)||(6526268-6526386)
chr6 (120-237)||(6473207-6473325)
chr6 (126-237)||(6457269-6457381)
chr6 (3-90)||(1841805-1841892)
chr6 (120-191)||(13035906-13035977)
chr6 (144-232)||(6516295-6516384)
chr6 (164-237)||(1827215-1827289)
chr6 (1-87)||(6465511-6465597)
chr6 (1-77)||(1832549-1832625)
chr6 (119-169)||(1827156-1827206)
chr6 (160-215)||(1845847-1845902)
chr6 (180-237)||(6528089-6528147)
chr6 (174-215)||(1842006-1842047)
[»] chr7 (4 HSPs)
chr7 (125-212)||(3753997-3754084)
chr7 (147-237)||(46383313-46383404)
chr7 (121-211)||(4046155-4046245)
chr7 (144-210)||(46383849-46383914)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 1822191 - 1822372
Alignment:
Q  1 agatgttgaaggtttgaactcatatgcaataacaacaaattcttcttacttttatggtaaattgattgccagggctgcaaggttggcattaattcttcac 100  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |     
T  1822191 agatgttgaaggtatgaactcatctgcaataacaacaaattcttcttacttttatagtaaattgattgccagggctgcaaggttggcattaattctttaa 1822290  T
Q  101 acaagggtctaatatgactggtgctgattttgggttttgaatttataatgaccatcattatcatttaggatcgtttctctat 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||    
T  1822291 acaagggtctaatatgactggtgctgattttgggttttgaatttataatgaccatcattatcatttagaatactttctctat 1822372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 1838931 - 1839143
Alignment:
Q  1 agatgttgaaggtttgaactcatatgcaataacaacaaattcttcttacttttatggtaaattgattgccagggctgcaaggttggcattaattcttcac 100  Q
    ||||||||||   |||||||||| |||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |     
T  1838931 agatgttgaataattgaactcatttgcaataatatcaaattcttcatacttttatggtaaattgattgccagggctgcaaggttggcattaattgtttaa 1839030  T
Q  101 acaagggtctaatatgactggtgctgattttgggttttgaatttataatgaccatcattatcatttaggatcgtttctctatggaattgcagtgcttgca 200  Q
    |||||||||||||||||||||||||||||| |||||| |||||||| |||| ||||||||||||||||||| |||||||||  ||||||||||||   ||    
T  1839031 acaagggtctaatatgactggtgctgatttcgggtttggaatttatgatgagcatcattatcatttaggatagtttctctaatgaattgcagtgc--aca 1839128  T
Q  201 aagattgatccaatt 215  Q
    |||||||||||||||    
T  1839129 aagattgatccaatt 1839143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 6465366 - 6465229
Alignment:
Q  101 acaagggtctaatatgactggtgctgattttgggttttgaatttataatgaccatcattatcatttaggatcgtttctctatggaattgcagtgcttgca 200  Q
    |||||||||||||   ||||||||||||||||| ||  || |||||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||    
T  6465366 acaagggtctaatgatactggtgctgattttggattcggagtttataatgatcatcattatcatttaggatactttctctatggaattgctgtgcttgca 6465267  T
Q  201 aagattgatccaa-ttggggtaggaagtataagcctca 237  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  6465266 aagattgatccaatttggggtaggaagtataagcctca 6465229  T

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Target: chr6; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 101 - 237
Target Start/End: Original strand, 1831934 - 1832071
Alignment:
Q  101 acaagggtctaatatgactggtgctgattttgggttttgaatttataatgaccatcattatcatttaggatcgtttctctatggaattgcagtgcttgca 200  Q
    ||||||||||||||  ||||||| |||||| |||||| ||||| |||| ||||||||||||||||||||||  ||||||| |||||||||||||||||||    
T  1831934 acaagggtctaataatactggtgttgatttcgggtttggaattaataacgaccatcattatcatttaggatactttctctttggaattgcagtgcttgca 1832033  T
Q  201 aagattgatccaa-ttggggtaggaagtataagcctca 237  Q
    ||||||||||||| |||||||||  |||||||||||||    
T  1832034 aagattgatccaatttggggtagagagtataagcctca 1832071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 6526386 - 6526268
Alignment:
Q  120 ggtgctgattttgggttttgaatttataatgaccatcattatcatttaggatcgtttctctatggaattgcagtgcttgcaaagattgatcc-aattggg 218  Q
    |||||||||||||||||  || |||||||||| |||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||| | |||||    
T  6526386 ggtgctgattttgggttcggagtttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgctaagattgatcctatttggg 6526287  T
Q  219 gtaggaagtataagcctca 237  Q
    |||| ||||||||| ||||    
T  6526286 gtagaaagtataagtctca 6526268  T

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Target: chr6; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 120 - 237
Target Start/End: Original strand, 6473207 - 6473325
Alignment:
Q  120 ggtgctgattttgggttttgaatttataatgaccatcattatcatttaggatcgtttctctatggaattgcagtgcttgcaaagattgatcca-attggg 218  Q
    ||||||||||| |||||  ||||||||||||| ||||||||||||||||| |  |||||||||||||||||||||||||| ||||||||||||  |||||    
T  6473207 ggtgctgatttcgggttcggaatttataatgatcatcattatcatttaggttactttctctatggaattgcagtgcttgctaagattgatccagtttggg 6473306  T
Q  219 gtaggaagtataagcctca 237  Q
    ||| ||| |||||||||||    
T  6473307 gtaagaaatataagcctca 6473325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 237
Target Start/End: Complemental strand, 6457381 - 6457269
Alignment:
Q  126 gattttgggttttgaatttataatgaccatcattatcatttaggatcgtttctctatggaattgcagtgcttgcaaagattgatcca-attggggtagga 224  Q
    |||||||||||  | ||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||  |||||| || |    
T  6457381 gattttgggttcggtatttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgcaaagattgatccagcttggggaagaa 6457282  T
Q  225 agtataagcctca 237  Q
    ||||||| |||||    
T  6457281 agtataaacctca 6457269  T

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Target: chr6; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 1841805 - 1841892
Alignment:
Q  3 atgttgaaggtttgaactcatatgcaataacaacaaattcttcttacttttatggtaaattgattgccagggctgcaaggttggcatt 90  Q
    ||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||  ||||| |||| |||| ||| ||||||    
T  1841805 atgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaatctattgctagggttgcatggtcggcatt 1841892  T

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Target: chr6; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 13035906 - 13035977
Alignment:
Q  120 ggtgctgattttgggttttgaatttataatgaccatcattatcatttaggatcgtttctctatggaattgca 191  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||| |  ||||||||||||||||||    
T  13035906 ggtgctgatttcgggtttggaatttataatgaccatcattatcatttaggttactttctctatggaattgca 13035977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 6516295 - 6516384
Alignment:
Q  144 tataatgaccatcattatcatttaggatcgtttctctatggaattgcagtgcttgcaaagattgatcca-attggggtaggaagtataag 232  Q
    |||||||| ||||||||||| |||||||  ||||| |||||||||||||||||||  ||||||||||||   ||||||||||||||||||    
T  6516295 tataatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatccagcatggggtaggaagtataag 6516384  T

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Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 1827215 - 1827289
Alignment:
Q  164 tttaggatcgtttctctatggaattgcagtgcttgcaaagattgatccaa-ttggggtaggaagtataagcctca 237  Q
    ||||||||  ||||||||| |||||||||||||||||||||||||| ||| ||||||||| || |||||||||||    
T  1827215 tttaggatactttctctatcgaattgcagtgcttgcaaagattgattcaatttggggtagaaaatataagcctca 1827289  T

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Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 6465597 - 6465511
Alignment:
Q  1 agatgttgaaggtttgaactcatatgcaataacaacaaattcttcttacttttatggtaaattgattgccagggctgcaaggttggc 87  Q
    |||||||||||||||||| || | ||||||| | || ||||| |||||||||||||| || |||||||| |||||||| ||||||||    
T  6465597 agatgttgaaggtttgaattcgtctgcaatagcgacgaattcgtcttacttttatggcaagttgattgctagggctgctaggttggc 6465511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1832549 - 1832625
Alignment:
Q  1 agatgttgaaggtttgaactcatatgcaataacaacaaattcttcttacttttatggtaaattgattgccagggctg 77  Q
    ||||||||||||||||||||||| |||||||||||| |  ||||| ||||||||| ||||||  ||||| |||||||    
T  1832549 agatgttgaaggtttgaactcatctgcaataacaactatatcttcatacttttatcgtaaataaattgctagggctg 1832625  T

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Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 1827156 - 1827206
Alignment:
Q  119 tggtgctgattttgggttttgaatttataatgaccatcattatcatttagg 169  Q
    |||||||||||| |||||| |||||||||| ||||||||||||||||||||    
T  1827156 tggtgctgatttcgggtttggaatttataacgaccatcattatcatttagg 1827206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 1845847 - 1845902
Alignment:
Q  160 atcatttaggatcgtttctctatggaattgcagtgcttgcaaagattgatccaatt 215  Q
    |||||||| |||  |||||||| | |||| ||||||||||||||||||||||||||    
T  1845847 atcatttacgatactttctctacgaaatttcagtgcttgcaaagattgatccaatt 1845902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 6528147 - 6528089
Alignment:
Q  180 tatggaattgcagtgcttgcaaagattgatcca-attggggtaggaagtataagcctca 237  Q
    |||| |||||| |||||||| ||||||||||||  ||||||||||||||||||| ||||    
T  6528147 tatgcaattgctgtgcttgctaagattgatccagcttggggtaggaagtataaggctca 6528089  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 1842006 - 1842047
Alignment:
Q  174 tttctctatggaattgcagtgcttgcaaagattgatccaatt 215  Q
    |||||||||||||||||| ||| ||| |||||||||||||||    
T  1842006 tttctctatggaattgcattgcatgctaagattgatccaatt 1842047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 3753997 - 3754084
Alignment:
Q  125 tgattttgggttttgaatttataatgaccatcattatcatttaggatcgtttctctatggaattgcagtgcttgcaaagattgatcca 212  Q
    ||||||||| ||| ||||||||||||| ||||||||||||||||| |  ||||| ||||||||||| || ||||||||||||||||||    
T  3753997 tgattttggttttggaatttataatgatcatcattatcatttaggttattttctttatggaattgctgttcttgcaaagattgatcca 3754084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 46383404 - 46383313
Alignment:
Q  147 aatgaccatcattatcatttaggatcgtttctctatggaattgcagtgcttgcaaagattgatcc-aattggggtaggaagtataagcctca 237  Q
    ||||| |||||||||||||||||||  | ||||||||||||| ||||||| || ||||||||||| | ||||||||||||||||||| ||||    
T  46383404 aatgatcatcattatcatttaggatattctctctatggaattacagtgctcgccaagattgatcctatttggggtaggaagtataagtctca 46383313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 4046245 - 4046155
Alignment:
Q  121 gtgctgattttgggttttgaatttataatgaccatcattatcatttaggatcgtttctctatggaattgcagtgcttgcaaagattgatcc 211  Q
    ||||||||||||| ||| |||| |||||||| ||||||||||||||||| |  ||||| |||||||||| ||| |||||||| ||||||||    
T  4046245 gtgctgattttggttttggaatgtataatgatcatcattatcatttaggttattttctttatggaattggagttcttgcaaaaattgatcc 4046155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 46383914 - 46383849
Alignment:
Q  144 tataatgaccatcattatcatttaggatcgtttctctatggaattgcagtgcttgcaaagattgatc 210  Q
    |||||||| |||||| ||||||||||||  ||||||||||||||||| |||||||| ||||||||||    
T  46383914 tataatgatcatcatcatcatttaggatattttctctatggaattgc-gtgcttgctaagattgatc 46383849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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