View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20204_low_3 (Length: 604)

Name: NF20204_low_3
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20204_low_3
NF20204_low_3
[»] chr6 (22 HSPs)
chr6 (1-313)||(1831959-1832271)
chr6 (369-586)||(1832401-1832618)
chr6 (39-298)||(1827215-1827460)
chr6 (28-298)||(6465044-6465314)
chr6 (1-307)||(6473213-6473519)
chr6 (1-307)||(1839056-1839364)
chr6 (28-298)||(6457084-6457354)
chr6 (28-269)||(6526109-6526353)
chr6 (35-172)||(1845847-1845983)
chr6 (29-235)||(1841986-1842192)
chr6 (140-313)||(1828190-1828363)
chr6 (510-578)||(1822184-1822252)
chr6 (1-55)||(13035912-13035966)
chr6 (323-364)||(1832301-1832342)
chr6 (510-578)||(1841796-1841864)
chr6 (1-44)||(1827163-1827206)
chr6 (1-55)||(1822316-1822370)
chr6 (369-403)||(1847047-1847081)
chr6 (1-170)||(6505319-6505488)
chr6 (28-170)||(6516304-6516446)
chr6 (510-547)||(6465567-6465604)
chr6 (369-401)||(1842425-1842457)
[»] chr7 (4 HSPs)
chr7 (28-149)||(46383276-46383398)
chr7 (228-298)||(46383132-46383202)
chr7 (1-125)||(3753998-3754122)
chr7 (90-125)||(9665567-9665602)
[»] chr1 (1 HSPs)
chr1 (76-151)||(35244270-35244345)
[»] chr5 (1 HSPs)
chr5 (464-514)||(17848982-17849033)
[»] chr4 (1 HSPs)
chr4 (90-125)||(13536591-13536626)


Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 1831959 - 1832271
Alignment:
Q  1 gatttcgggtttggaattaagaacgaccatcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggtagaa 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||     
T  1831959 gatttcgggtttggaattaataacgaccatcattatcatttaggatactttctctttggaattgcagtgcttgcaaagattgatccaatttggggtagag 1832058  T
Q  101 agcataagcctcaagcctattcactcattgaggattttatgaccttgagtagaaattcaaactcaaattacacacgtcaaagatgttttgagctttgtaa 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  1832059 agtataagcctcaagcctattcactcattgaggattttatgaccttgagtagaaattcaaactcaaattacgcacgtcaatgatgttttgagctttgtaa 1832158  T
Q  201 actacgctcttaggctgtaggggtaagtgaattcactgatggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctgcagccttgaca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1832159 actacgctcttaggctgtaggggtaagtgaattcactgatggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctgcagccttgact 1832258  T
Q  301 ggtatggttacta 313  Q
    |||||||||||||    
T  1832259 ggtatggttacta 1832271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 369 - 586
Target Start/End: Original strand, 1832401 - 1832618
Alignment:
Q  369 aaagaatgtcggctcggcattcagctcttaccatttcttcctatctcttaagtatgcgnnnnnnnttatccaattttgagacaagaaccttaatcagcct 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||| |||||||    
T  1832401 aaagaatgtcggctcggcattcagctcttaccatttcttcctatctcttaagtatgtgaaaaaaattatccaattttgagacaagaaccttattcagcct 1832500  T
Q  469 aaatcatgaagtccttgataatatgttttgaattgaacatgttttgaaagatgttgaaggtttgaactcatctgcaataacaactatatcttcatacttt 568  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1832501 aagtcatgaagtccttgataatatgttttgaattgaacatgttttgaaagatgttgaaggtttgaactcatctgcaataacaactatatcttcatacttt 1832600  T
Q  569 tatcgtaaataaattgct 586  Q
    ||||||||||||||||||    
T  1832601 tatcgtaaataaattgct 1832618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 39 - 298
Target Start/End: Original strand, 1827215 - 1827460
Alignment:
Q  39 tttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggtagaaagcataagcctcaagcctattcactcattgaggatttt 138  Q
    |||||||||||||||||  ||||||||||||||| ||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||  ||||||    
T  1827215 tttaggatactttctctatcgaattgcagtgcttgcaaagattgattcaatttggggtagaaaatataagcctcaagcctattcactcattgccgatttt 1827314  T
Q  139 atgaccttgagtagaaattcaaactcaaattacacacgtcaaagatgttttgagctttgtaaactacgctcttaggctgtaggggtaagtgaattcactg 238  Q
    ||||||| |||||||||||| |||              || ||| | ||||| |||||||||||||| ||||| ||||| |||| ||| |||||||||||    
T  1827315 atgacctcgagtagaaattcgaac--------------tctaaggtattttgtgctttgtaaactacactcttgggctggagggctaactgaattcactg 1827400  T
Q  239 atggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctgcagccttga 298  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||    
T  1827401 atggaagaaatcaagagagcgctagtgaagcaatgaatgcatattattctgcagccttga 1827460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 28 - 298
Target Start/End: Complemental strand, 6465314 - 6465044
Alignment:
Q  28 catcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggtagaaagcataagcctcaagcctattcactca 127  Q
    ||||||||||||||||||||||||||||   ||||||| |||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  6465314 catcattatcatttaggatactttctctatggaattgctgtgcttgcaaagattgatccaatttggggtaggaagtataagcctcaagcttattcactca 6465215  T
Q  128 ttgaggattttatgaccttgagtagaaattcaaactcaaattacacacgtcaaagatgttttgagctttgtaaactacgctcttaggctgtaggggtaag 227  Q
    | |  |||||||||| |||||| |||||| | ||||| |||||||| |||| ||| ||||| || |||| |||| | |  || | ||| | |||| |||     
T  6465214 tggctgattttatgaacttgagcagaaatccgaactcgaattacacccgtctaaggtgtttcgatctttttaaattgcattcgtgggccggagggttaac 6465115  T
Q  228 tgaattcactgatggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctgcagccttga 298  Q
    ||| |||   ||||||||||| |||||||  |||||||||||  |||||||||| ||||| ||||| ||||    
T  6465114 tgagttcggagatggaagaaatcaagagagtactagtgaagctgtgaatgcatactattcagcagctttga 6465044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 6473213 - 6473519
Alignment:
Q  1 gatttcgggtttggaattaagaacgaccatcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggtagaa 100  Q
    ||||||||||| |||||| | || || ||||||||||||||||| ||||||||||   |||||||||||||| | |||||||||||| |||||||||  |    
T  6473213 gatttcgggttcggaatttataatgatcatcattatcatttaggttactttctctatggaattgcagtgcttgctaagattgatccagtttggggtaaga 6473312  T
Q  101 agcataagcctcaagcctattcactcattgaggattttatgaccttgagtagaaattcaaactcaaattacacacgtcaaagatgttttgagctttgtaa 200  Q
    |  ||||||||||||||||| ||||||| || ||||||||||||||||| | ||| || || |||||||| || | |  ||| |||||||| ||||  ||    
T  6473313 aatataagcctcaagcctatgcactcatggaagattttatgaccttgagcaaaaactcgaattcaaattatactcctttaaggtgttttgatctttacaa 6473412  T
Q  201 actacgctcttaggctgtaggggtaagtgaattcactgatggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctgcagccttgaca 300  Q
    ||| |  |||| ||| | |||| |||  || ||  | |||||||||||||||||||  |||||||||||  |||||||||| ||||||||||| ||||      
T  6473413 actgcattcttgggccggagggttaaccgagtttgcggatggaagaaaccaagagagtactagtgaagccgtgaatgcatactattctgcagcgttgatc 6473512  T
Q  301 ggtatgg 307  Q
    |||||||    
T  6473513 ggtatgg 6473519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 1839056 - 1839364
Alignment:
Q  1 gatttcgggtttggaattaagaacgaccatcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggtagaa 100  Q
    |||||||||||||||||| |  | || |||||||||||||||||||| ||||||| | ||||||||||||   |||||||||||||||||||||||| ||    
T  1839056 gatttcgggtttggaatttatgatgagcatcattatcatttaggatagtttctctaatgaattgcagtgca--caaagattgatccaatttggggtataa 1839153  T
Q  101 agcataa----gcctcaagcctattcactcattgaggattttatgaccttgagtagaaattcaaactcaaattacacacgtcaaagatgttttgagcttt 196  Q
    |   |||    ||||||| |||||||||||||||   ||||||||||||  ||||||||||| ||||| |||||||   ||| ||| ||||| || ||||    
T  1839154 aatttaattaagcctcaaacctattcactcattgcaaattttatgacctcaagtagaaattcgaactctaattacatgtgtctaaggtgtttagatcttt 1839253  T
Q  197 gtaaactacgctcttaggctgtaggggtaagtgaattcactgatggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctgcagcctt 296  Q
     |||| ||| ||||| ||| | |||| |||  || ||| ||||||| ||||| ||||| | |||||||||| || |||||||||| |||||| |||| ||    
T  1839254 ataaattacactcttgggccggagggctaacagagttcgctgatggtagaaatcaagatagcactagtgaatcagtgaatgcatactattcttcagcttt 1839353  T
Q  297 gacaggtatgg 307  Q
    ||  |||||||    
T  1839354 gattggtatgg 1839364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 28 - 298
Target Start/End: Complemental strand, 6457354 - 6457084
Alignment:
Q  28 catcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggtagaaagcataagcctcaagcctattcactca 127  Q
    ||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||||  |||||| |||||| |||| |||||||| ||||||||||    
T  6457354 catcattatcatttaggatactttctctatggaattgcagtgcttgcaaagattgatccagcttggggaagaaagtataaacctcaagcttattcactca 6457255  T
Q  128 ttgaggattttatgaccttgagtagaaattcaaactcaaattacacacgtcaaagatgttttgagctttgtaaactacgctcttaggctgtaggggtaag 227  Q
    | |  |||||  ||| |||  | ||||| |||||||||||||| ||||||  ||| ||||| || |||| |||| | |  |||| ||||| |||  |||     
T  6457254 tggcagatttcctgaacttaggaagaaaatcaaactcaaattatacacgtttaaggtgtttcgatctttataaatttcattcttgggctggaggactaat 6457155  T
Q  228 tgaattcactgatggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctgcagccttga 298  Q
     |||||  | ||||||||||| |||||||  |||||||||||  |||||||||| ||| ||||||| ||||    
T  6457154 cgaatttgcagatggaagaaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattga 6457084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 28 - 269
Target Start/End: Complemental strand, 6526353 - 6526109
Alignment:
Q  28 catcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggtagaaagcataagcctcaagcctattcactca 127  Q
    ||||||||||||||||||||||||||||   |||||||||||||| | ||||||||||| ||||||||||||||| ||||| |||||||||||||  |||    
T  6526353 catcattatcatttaggatactttctctatggaattgcagtgcttgctaagattgatcctatttggggtagaaagtataagtctcaagcctattctgtca 6526254  T
Q  128 ttgaggattttatgaccttgagtagaaattcaaactcaa---attacacacgtcaaagatgttttgagctttgtaaactacgctcttaggctgtaggggt 224  Q
    | |  ||||||||||   |||| |||||||||||| | |   ||||||| | || ||| ||||| || || | |||| ||| ||||| ||||| |||| |    
T  6526253 tggctgattttatgaatctgagcagaaattcaaaccctagttattacacgcatctaaggtgtttcgatctgtataaattacactcttgggctggagggct 6526154  T
Q  225 aagtgaattcactgatggaagaaaccaagagaacactagtgaagc 269  Q
    ||  |||||||||||||||||||| |||||||  || ||||||||    
T  6526153 aacagaattcactgatggaagaaatcaagagagtaccagtgaagc 6526109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 35 - 172
Target Start/End: Original strand, 1845847 - 1845983
Alignment:
Q  35 atcatttaggatactttctcttacgaa-ttgcagtgcttccaaagattgatccaatttggggtagaaagcataagcctcaagcctattcactcattgagg 133  Q
    |||||||| |||||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||||   ||||||||||||||||| ||||||||  |    
T  1845847 atcatttacgatactttctct-acgaaatttcagtgcttgcaaagattgatccaatttggggtggaaaatttaagcctcaagcctatttactcattgcag 1845945  T
Q  134 attttatgaccttgagtagaaattcaaactcaaattaca 172  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  1845946 attttatgacc-tgagtagaaattcaaactctaattaca 1845983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 1841986 - 1842192
Alignment:
Q  29 atcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggtagaaagcataagcctcaagcctattcactcat 128  Q
    |||| ||||||||| | ||||||||||   |||||||| ||| | | ||||||||||||||||||| || |||| || || ||||||   ||||||||||    
T  1841986 atcaatatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtatgagactcaagtggattcactcat 1842085  T
Q  129 tgaggattttatgaccttgagtagaaattcaaactcaaattacacacgtcaaagatgttttgagctttgtaaactacgctcttaggctgtaggggtaagt 228  Q
      |||||||||||||||||||||||||||||||||| ||| ||||  ||| ||| ||||| || ||||||||| ||| |||||  |||| |||| ||| |    
T  1842086 gaaggattttatgaccttgagtagaaattcaaactctaatgacacgtgtctaaggtgtttcgatctttgtaaattacactcttgagctggagggctaact 1842185  T
Q  229 gaattca 235  Q
    |||||||    
T  1842186 gaattca 1842192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 313
Target Start/End: Original strand, 1828190 - 1828363
Alignment:
Q  140 tgaccttgagtagaaattcaaactcaaattacacacgtcaaagatgttttgagctttgtaaactacgctcttaggctgtaggggtaagtgaattcactga 239  Q
    |||||||||||||||| || |||   ||||||||  |||  || ||||| || |||| |||| ||| ||||| ||| | |||| |||  |||||| ||||    
T  1828190 tgaccttgagtagaaactctaacaataattacacgtgtctgaggtgtttcgatctttataaattacactcttgggccggagggctaacagaattcgctga 1828289  T
Q  240 tggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctgcagccttgacaggtatggttacta 313  Q
    ||| ||||| ||||||| ||||||||| ||| |||||||||| ||||| ||||||||||  |||||||||||||    
T  1828290 tggtagaaatcaagagagcactagtgatgcagtgaatgcatactattccgcagccttgattggtatggttacta 1828363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 510 - 578
Target Start/End: Original strand, 1822184 - 1822252
Alignment:
Q  510 ttttgaaagatgttgaaggtttgaactcatctgcaataacaactatatcttcatacttttatcgtaaat 578  Q
    |||||||||||||||||||| |||||||||||||||||||||| |  ||||| ||||||||| ||||||    
T  1822184 ttttgaaagatgttgaaggtatgaactcatctgcaataacaacaaattcttcttacttttatagtaaat 1822252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13035912 - 13035966
Alignment:
Q  1 gatttcgggtttggaattaagaacgaccatcattatcatttaggatactttctct 55  Q
    |||||||||||||||||| | || |||||||||||||||||||| ||||||||||    
T  13035912 gatttcgggtttggaatttataatgaccatcattatcatttaggttactttctct 13035966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 1832301 - 1832342
Alignment:
Q  323 gaaaggagaaaatatgtacgagaaagtgtttactaaaagtat 364  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  1832301 gaaaggagaaaatatgtatgagaaagtgtttactaaaagtat 1832342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 510 - 578
Target Start/End: Original strand, 1841796 - 1841864
Alignment:
Q  510 ttttgaaagatgttgaaggtttgaactcatctgcaataacaactatatcttcatacttttatcgtaaat 578  Q
    |||||||| |||||||||||||||||||||||| ||||||||  |  ||||| ||||||||| ||||||    
T  1841796 ttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaat 1841864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1827163 - 1827206
Alignment:
Q  1 gatttcgggtttggaattaagaacgaccatcattatcatttagg 44  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  1827163 gatttcgggtttggaatttataacgaccatcattatcatttagg 1827206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1822316 - 1822370
Alignment:
Q  1 gatttcgggtttggaattaagaacgaccatcattatcatttaggatactttctct 55  Q
    ||||| |||||| ||||| | || ||||||||||||||||||| |||||||||||    
T  1822316 gattttgggttttgaatttataatgaccatcattatcatttagaatactttctct 1822370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 403
Target Start/End: Original strand, 1847047 - 1847081
Alignment:
Q  369 aaagaatgtcggctcggcattcagctcttaccatt 403  Q
    ||||||||||||||||| |||||||||||||||||    
T  1847047 aaagaatgtcggctcggaattcagctcttaccatt 1847081  T

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Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 6505488 - 6505319
Alignment:
Q  1 gatttcgggtttggaattaagaacgaccatcattatcatttaggatactttctcttacg-aattgcagtgcttccaaagattgatccaatttggggtaga 99  Q
    |||||||| || |||||| | || || ||||| | ||| |||||||| ||||| ||||| ||| |||||||||  |||||| |||||||  ||||||||     
T  6505488 gatttcggtttcggaatttacaatgatcatcactttcacttaggatattttct-ttacgcaatagcagtgcttgtaaagatcgatccaacatggggtagg 6505390  T
Q  100 aagcataagcctcaagcctattcactcattgaggattttatgaccttgagtagaaattcaaactcaaatta 170  Q
    ||  ||||| ||||||||||||||||  | || |||||||||| ||| || | | | || |||||||||||    
T  6505389 aaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatagaatcgaactcaaatta 6505319  T

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Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 6516304 - 6516446
Alignment:
Q  28 catcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggtagaaagcataagcctcaagcctattcactca 127  Q
    ||||||||||| |||||||| ||||| |   ||||||||||||||   ||||||||||||   |||||||| ||| |||||   ||| |||||||||| |    
T  6516304 catcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatccagcatggggtaggaagtataagaaacaatcctattcactta 6516403  T
Q  128 ttgaggattttatgaccttgagtagaaattcaaactcaaatta 170  Q
    | || || ||||||| ||| |||  ||| || |||||||||||    
T  6516404 tggaagactttatgaacttaagtttaaaatcgaactcaaatta 6516446  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 547
Target Start/End: Complemental strand, 6465604 - 6465567
Alignment:
Q  510 ttttgaaagatgttgaaggtttgaactcatctgcaata 547  Q
    ||||||||||||||||||||||||| || |||||||||    
T  6465604 ttttgaaagatgttgaaggtttgaattcgtctgcaata 6465567  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 401
Target Start/End: Original strand, 1842425 - 1842457
Alignment:
Q  369 aaagaatgtcggctcggcattcagctcttacca 401  Q
    ||||||||| |||||||||||||||||||||||    
T  1842425 aaagaatgttggctcggcattcagctcttacca 1842457  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 46383398 - 46383276
Alignment:
Q  28 catcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggtagaaagcataagcctc-aagcctattcactc 126  Q
    |||||||||||||||||||| | |||||   ||||| |||||||  | ||||||||||| ||||||||||| ||| ||||| ||| |||| |||||||||    
T  46383398 catcattatcatttaggatattctctctatggaattacagtgctcgccaagattgatcctatttggggtaggaagtataagtctcaaagcttattcactc 46383299  T
Q  127 attgaggattttatgaccttgag 149  Q
    || || ||| |||||| ||||||    
T  46383298 atggaagatattatgaacttgag 46383276  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 46383202 - 46383132
Alignment:
Q  228 tgaattcactgatggaagaaaccaagagaacactagtgaagcaatgaatgcatattattctgcagccttga 298  Q
    ||||||||||||||||||||| ||| |||  ||||||||| |  |||||||||| ||||||||||| ||||    
T  46383202 tgaattcactgatggaagaaatcaaaagagtactagtgaaactttgaatgcatactattctgcagctttga 46383132  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 3753998 - 3754122
Alignment:
Q  1 gatttcgggtttggaattaagaacgaccatcattatcatttaggatactttctcttacgaattgcagtgcttccaaagattgatccaatttggggtagaa 100  Q
    ||||| || ||||||||| | || || ||||||||||||||||| || ||||| |   ||||||| || ||| |||||||||||||| |||||||   ||    
T  3753998 gattttggttttggaatttataatgatcatcattatcatttaggttattttctttatggaattgctgttcttgcaaagattgatccattttggggacaaa 3754097  T
Q  101 agcataagcctcaagcctattcact 125  Q
    || |||| || ||||| ||||||||    
T  3754098 agtataaaccacaagcttattcact 3754122  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 9665567 - 9665602
Alignment:
Q  90 ttggggtagaaagcataagcctcaagcctattcact 125  Q
    ||||||||||||| ||||||||||||||||||||||    
T  9665567 ttggggtagaaagtataagcctcaagcctattcact 9665602  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 35244270 - 35244345
Alignment:
Q  76 aagattgatccaatttggggtagaaagcataagcctcaagcctattcactcattgaggattttatgaccttgagta 151  Q
    ||||||||||||| ||||||||| ||| ||||  |||||||||||||||||||  | |||||||||| ||||||||    
T  35244270 aagattgatccaacttggggtaggaagtataaatctcaagcctattcactcatgaaagattttatgaacttgagta 35244345  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 514
Target Start/End: Original strand, 17848982 - 17849033
Alignment:
Q  464 agcctaaatcatgaagtccttg-ataatatgttttgaattgaacatgttttg 514  Q
    |||||||||||||||||||||| ||||||||||||||| ||||  |||||||    
T  17848982 agcctaaatcatgaagtccttgtataatatgttttgaactgaatgtgttttg 17849033  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 13536591 - 13536626
Alignment:
Q  90 ttggggtagaaagcataagcctcaagcctattcact 125  Q
    ||||||||||||| ||||||||||||||||||||||    
T  13536591 ttggggtagaaagtataagcctcaagcctattcact 13536626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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