View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_low_30 (Length: 252)
Name: NF20204_low_30
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 6498167 - 6498387
Alignment:
| Q |
18 |
actctgctgtgttgttttgcttatttggagtttttagttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaaattt |
117 |
Q |
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| T |
6498167 |
actctgctgtgttgttttgcttatttggagtttttatttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaagttt |
6498266 |
T |
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| Q |
118 |
tcggggtgtgagttggag-nnnnnnnnnactgaactatgctgtgaaattggtaggatcttatgctatgtgtttagatcccgcgatttgtgatattgtgac |
216 |
Q |
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| T |
6498267 |
ttggggtgtgagttggagttttttttttactgaactatgctgtgaaattggtaggatcttatgctatgtgtttagatcccgcgatttgtgatattgtgac |
6498366 |
T |
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| Q |
217 |
cccttcttgatcctacctatg |
237 |
Q |
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| T |
6498367 |
cccttcttgatcctgcctatg |
6498387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 31733180 - 31733396
Alignment:
| Q |
22 |
tgctgtgttgttttgcttatttggagtttttagttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaaattttcgg |
121 |
Q |
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| T |
31733180 |
tgctgtgtggttttgcttatttggagtttttatttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatgaagtttttgg |
31733279 |
T |
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| Q |
122 |
ggtgtgagttggag-nnnnnnnnnactgaactatgctgtgaaattggtaggatcttatgctatgtgtttagatcccgcgatttgtgatattgtgacccct |
220 |
Q |
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| T |
31733280 |
ggtgtgagttggagtttttttttgactgaactatgctgtgaaattggtaggatcttatgctatgtgttcagatcccgcgatttgtgatattgtgacccct |
31733379 |
T |
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| Q |
221 |
tcttgatcctacctatg |
237 |
Q |
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| T |
31733380 |
tctcgatcctgcctatg |
31733396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 31735860 - 31735946
Alignment:
| Q |
24 |
ctgtgttgttttgcttatttggagtttttagttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcat |
110 |
Q |
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| T |
31735860 |
ctgtgttgttttgcttatttggagtttttagttgtggcatttgacctttgtatgactatatgttgtgatcctgaattggagtttcat |
31735946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 31736020 - 31736065
Alignment:
| Q |
192 |
atcccgcgatttgtgatattgtgaccccttcttgatcctacctatg |
237 |
Q |
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| T |
31736020 |
atcccgtgatttgtgatattgtgatcccttcttggtcctgcctatg |
31736065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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