View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20204_low_35 (Length: 239)

Name: NF20204_low_35
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20204_low_35
NF20204_low_35
[»] chr2 (3 HSPs)
chr2 (1-223)||(11926947-11927169)
chr2 (144-218)||(45134631-45134704)
chr2 (171-213)||(13136481-13136523)
[»] chr6 (1 HSPs)
chr6 (140-215)||(33246769-33246843)
[»] chr5 (1 HSPs)
chr5 (140-216)||(41364743-41364819)
[»] scaffold0332 (1 HSPs)
scaffold0332 (174-222)||(12112-12160)
[»] chr7 (2 HSPs)
chr7 (144-218)||(42022917-42022991)
chr7 (180-216)||(3905199-3905235)
[»] chr1 (2 HSPs)
chr1 (90-138)||(7040597-7040645)
chr1 (4-84)||(24864341-24864421)
[»] chr3 (1 HSPs)
chr3 (140-184)||(5411518-5411562)


Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11926947 - 11927169
Alignment:
Q  1 agatattcaaggagttattcatttgatttatcaattctatccaattttaaggaattcatttaaaatccaattcttgagttcctaacaagttgaaacatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11926947 agatattcaaggagttattcatttgatttatcaattctatccaattttaaggaattcatttgaaatccaattcttgagttcctaacaagttgaaacatgc 11927046  T
Q  101 atgtttctgcattggtcttgttttatcatacatgattatgaatttagtttgttagattagtcttagttatagcttattctctcttttagaatattatctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11927047 atgtttctgcattggtcttgttttatcatacatgattatgaatttagtttgttagattagtcttagttatagcttattctctcttttagaatattatctc 11927146  T
Q  201 tttcatttatgaacaaccaaaag 223  Q
    |||||||||||||||||||||||    
T  11927147 tttcatttatgaacaaccaaaag 11927169  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 45134704 - 45134631
Alignment:
Q  144 ttagtttgttagattagtcttagttatagcttattctctcttttagaatattatctctttcatttatgaacaacc 218  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||| |||||||    
T  45134704 ttagtttgttagattagt-ttagttttagcttattctctcttttagaatattatctctctcatttataaacaacc 45134631  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 13136523 - 13136481
Alignment:
Q  171 agcttattctctcttttagaatattatctctttcatttatgaa 213  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  13136523 agcttattctctcttttagaatattatcactctcatttatgaa 13136481  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 33246769 - 33246843
Alignment:
Q  140 gaatttagtttgttagattagtcttagttatagcttattctctcttttagaatattatctctttcatttatgaaca 215  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| | | | |||||| ||||||||||||    
T  33246769 gaatttagttt-ttagattagtcttagttatagcttattctctcttttagtacaatttctcttccatttatgaaca 33246843  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 41364743 - 41364819
Alignment:
Q  140 gaatttagtttgttagattagtcttagttatagcttattctctcttttagaatattatctctttcatttatgaacaa 216  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||||||| | | | ||||||||||| ||||||||    
T  41364743 gaatttagtttcttatattagtcttagtcatagcttattctctcttttagtacaatttctctttcattaatgaacaa 41364819  T

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Target: scaffold0332 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 12112 - 12160
Alignment:
Q  174 ttattctctcttttagaatattatctctttcatttatgaacaaccaaaa 222  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  12112 ttattctctcttttagaatattatcttcttcatttatgaacaaccaaaa 12160  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 42022917 - 42022991
Alignment:
Q  144 ttagtttgttagattagtcttagttatagcttattc-tctcttttagaatattatctctttcatttatgaacaacc 218  Q
    ||||||||||||| |||| |||||| ||| |||||  ||||||||||||||| |||||||||||||||||||||||    
T  42022917 ttagtttgttagaatagt-ttagttttagtttatttatctcttttagaatatcatctctttcatttatgaacaacc 42022991  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 3905235 - 3905199
Alignment:
Q  180 tctcttttagaatattatctctttcatttatgaacaa 216  Q
    |||||||||||||||||||||| ||||||||||||||    
T  3905235 tctcttttagaatattatctctctcatttatgaacaa 3905199  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 7040645 - 7040597
Alignment:
Q  90 ttgaaacatgcatgtttctgcattggtcttgttttatcatacatgatta 138  Q
    ||||||||||||||||||| ||||||||| ||| |||| ||||||||||    
T  7040645 ttgaaacatgcatgtttctccattggtctagttatatcttacatgatta 7040597  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 24864421 - 24864341
Alignment:
Q  4 tattcaaggagttattcatttgatttatcaattctatccaattttaaggaattcatttaaaatccaattcttgagttccta 84  Q
    |||| ||||| |||||||||||||||| ||||||| |||| ||||  ||||| | |||  ||||||| ||||| |||||||    
T  24864421 tattaaaggaattattcatttgatttaccaattctgtccagttttggggaatacgtttggaatccaagtcttgggttccta 24864341  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 5411518 - 5411562
Alignment:
Q  140 gaatttagtttgttagattagtcttagttatagcttattctctct 184  Q
    ||||||||||||||||| ||||  ||||| |||||||||||||||    
T  5411518 gaatttagtttgttagaatagttatagttgtagcttattctctct 5411562  T

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