View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_low_39 (Length: 220)
Name: NF20204_low_39
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 11050543 - 11050343
Alignment:
| Q |
1 |
acttttcgaattttattccctctaaagatctatttctaattttcaacgaagaaggaaaggggaatttggtgataaactattccaagaagcatcctctctt |
100 |
Q |
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| T |
11050543 |
acttttcgaattttattccctctaaagatctatttttaattttcaacgaagaaggaaagtgaaatttgatgataaactattccaagaagcatcctctctt |
11050444 |
T |
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| Q |
101 |
taatatcctttccatggtccgattccatcaattccttaactctctcacccaactctgtgccactcacaaacctattttctgattggttcactttcaaagc |
200 |
Q |
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|||||| ||||||| |||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11050443 |
taatat-ctttcca-------attccatcaactccttaactctctcacccaattctgcgccactcacaaacctattttctgattggttcacttttaaagc |
11050352 |
T |
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| Q |
201 |
caccttcat |
209 |
Q |
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||||||||| |
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| T |
11050351 |
caccttcat |
11050343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 11019345 - 11019227
Alignment:
| Q |
91 |
atcctctctttaatatcctttccatggtccgattccatcaattccttaactctctcacccaactctgtgccactcacaaacctattttctgattggttca |
190 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11019345 |
atcctctctttaatatcctttccacggtccgattccatcaactccttaactctctcacccaactctgtgccactcacaaacctattttctgattggttca |
11019246 |
T |
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| Q |
191 |
ctttcaaagccaccttcat |
209 |
Q |
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||||||||||||||||||| |
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| T |
11019245 |
ctttcaaagccaccttcat |
11019227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 11019529 - 11019438
Alignment:
| Q |
1 |
acttttcgaattttattccctctaaagatctatttctaattttcaacgaagaaggaaaggggaatttggtgataaactattccaagaagcat |
92 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11019529 |
acttttcgaattttattccctctaaagatctatttttaattttcaacgaagaaggaaaggggaatttggtgataaactattccaagaagcat |
11019438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 11002934 - 11002883
Alignment:
| Q |
121 |
gattccatcaattccttaactctctcacccaactctgtgccactcacaaacc |
172 |
Q |
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||||||||||| |||||||||||||| |||||||| | ||||||||||||| |
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| T |
11002934 |
gattccatcaactccttaactctctcccccaactcatttccactcacaaacc |
11002883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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