View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_low_40 (Length: 201)
Name: NF20204_low_40
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 87; Significance: 6e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 11050566 - 11050652
Alignment:
| Q |
23 |
ttataaatatgtgtattacattgagatgtgaattaaaattagtagtatcttttttatgtcatgaagaatgatgttcatgtatcatat |
109 |
Q |
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| T |
11050566 |
ttataaatatgtgtattacattgagatgtgaattaaaattagtagtatcttttttatgtcatgaagaatgatgttcatgtatcatat |
11050652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 11019552 - 11019712
Alignment:
| Q |
23 |
ttataaatatgtgtattacattgagatgtgaattaaaattagtagtatcttttttatgtcatgaagaatgatgttcatgtatcatatgccgtatcnnnnn |
122 |
Q |
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| T |
11019552 |
ttataaatatgtgtattatattgagatgtgaatcaaaattagtagtatcttttttatgtcatgaagaatgatgttcatgcatcatatgtcgtatcttttt |
11019651 |
T |
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| Q |
123 |
nnggaattattttctgatnnnnnnnntatgtgtggctgctctttgcttcatgacataatagt |
184 |
Q |
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| T |
11019652 |
tcagaattattatctgat-aaaaaaatatgtgtggctgctctttgctttatgacataatagt |
11019712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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