View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_low_6 (Length: 460)
Name: NF20204_low_6
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 33624078 - 33624501
Alignment:
| Q |
18 |
acttcttgggtgtagcttgatcattgggttcgatctttaatctcaaatgattgcacttcatattcttgctcgtatcacaatacaagagggtaatctttcc |
117 |
Q |
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| T |
33624078 |
acttcttgggtgtagcatgatcattgggttcgatctttaatctcaaatcattgcacttc------ttgctcgtatcacagtacaagggggtaatctttcc |
33624171 |
T |
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| Q |
118 |
atatttttgaacaggtgacaatatataatggg-actgtagtgtcggtatgattatagtcttttcagggcatgaataaaatgtcaaagttaatttcctttt |
216 |
Q |
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| T |
33624172 |
atatttttgaacaggtgacaatatataatggggactgtagtgtcggtatgattatagtcttttcagggcatgaataaaatgtcaaagttaatttcctttt |
33624271 |
T |
|
| Q |
217 |
catgaactctctccatcaagtatctatctatatctatctatagatgataatctattttannnnnnngacaaagtatgtatgataatcttgtatacgctat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33624272 |
catgaactctctccatcaagtatctatctatatctatctatagatgataatctattttatttttttgacaaagtatgtatgataatcttgtatacgctat |
33624371 |
T |
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| Q |
317 |
gtaa-aaccnnnnnnntaatcttgtacgttagattattgagatcgaccgtgttattggtgatgttaatcaagtagctgatattcttttaaatattggctt |
415 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33624372 |
gtaataaccaaaaaaataatcttgtacgttagattattgagatcgaccgtgttattggtgatgttaatcaagtagctgatactcttttaaatattggctt |
33624471 |
T |
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| Q |
416 |
agtttagatttccaaataaatgtttttcat |
445 |
Q |
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| T |
33624472 |
agtttagatttccaaataaatgtttttcat |
33624501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 99 - 243
Target Start/End: Original strand, 33620748 - 33620889
Alignment:
| Q |
99 |
acaagagggtaatctttccatatttttgaacaggtgacaatatataatgggactgtagtgtcggtatgattatagtcttttcagggcatgaataaaatgt |
198 |
Q |
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| T |
33620748 |
acaagtggataatatttcgatattattgaacaggtgacaataaatcatggggctgtattg---gtattattttagtctttgaagggcatgaataaaatgt |
33620844 |
T |
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| Q |
199 |
caaagttaatttccttttcatgaactctctccatcaagtatctat |
243 |
Q |
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| T |
33620845 |
caaagttaatttccttttcatgaactttctccatcaagtacctat |
33620889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 33626730 - 33626826
Alignment:
| Q |
124 |
ttgaacaggtgacaatatataatgggactgtagtgtcggtatgattatagtcttttcagggcatgaataaaatgtcaaagttaatttccttttcatgaac |
223 |
Q |
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| T |
33626730 |
ttgaacaagtgaccataaataatggggc---agtgtcggtatggttatagccttttaggagcatgaataaaacgtcaaagttaatttcgttttcatgaac |
33626826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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