View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_low_7 (Length: 443)
Name: NF20204_low_7
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 49216880 - 49217162
Alignment:
| Q |
1 |
aggcatgattatgccttattgattgattgctttacaatcttctccgatgaggatagaaaacgttgaagtattaaggacagctacnnnnnnncaaggttgg |
100 |
Q |
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| T |
49216880 |
aggcatgattatgccgtattgattgattgctttacaatcttctccgatgaggatagaaaaagttgaagtattaaggacagctacaaaaaaacaaggttgg |
49216979 |
T |
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| Q |
101 |
taagataattgagcttaaactgacccaagacatagtgcattgtccatccctaataatgttgtatcataagatatataagtatcaaatatcaagtgtgtga |
200 |
Q |
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| T |
49216980 |
taagataattgaccttaaactgacccaagacatagtgcattgtccatccctaataatgttgtatcataagatatataagtatcaaatatcaagtg-gtga |
49217078 |
T |
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| Q |
201 |
gtacccgtatttgatgatgtgaaaactaactatctatgcatgtaacaannnnnnnnaggggatctatgcttgcaacatgtttagt |
285 |
Q |
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| T |
49217079 |
gtacccgtatttgatgatgtgaaaactaactatctatgcatgtaacaa-tttttttaggggatctatgcttgcaacatgtttagt |
49217162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 420
Target Start/End: Original strand, 49217214 - 49217255
Alignment:
| Q |
379 |
cgaaaatatctaattacaataattgtccataattctttctgc |
420 |
Q |
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| T |
49217214 |
cgaaaatatctaattacaataattgtccataattctttctgc |
49217255 |
T |
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