View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_low_8 (Length: 430)
Name: NF20204_low_8
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 30373277 - 30372883
Alignment:
| Q |
18 |
atgaggtgccaaaagaacctctccaaatctgaatatgacactaaaatagacatatatcatttcaaagcaaaaaagaaaatagtagaagaaaatgttaaga |
117 |
Q |
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| T |
30373277 |
atgagatgccaaaagaac---tccaaatctgaatatgacactaaaatagacatatatcatttcaaagcaaaaaagaaaatagtagaagaaaatgttaaga |
30373181 |
T |
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| Q |
118 |
ggcttctaaatggtcattcttcgtttcaaatcttgcctaacatgttaaaagtcatgcaacatgcagtatacgtacgtattagtattattttttataaata |
217 |
Q |
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| T |
30373180 |
ggcttctaaatggtcattcttcgtttcaaatgttgcctaacatgttaaaagtcatgcaacatgcagtatacgtacgtattagtattattttttataaata |
30373081 |
T |
|
| Q |
218 |
ctactctatatatacatacgtagttgaacaattt--nnnnnnnnncataatgaactgcttctggaatactcttttctttggctggattaataattgattg |
315 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30373080 |
ctactctatatatacatacgtagttgaacaatttaaaaaaaaaatcataatgaactgcttctggaatactcttttctttggctggattaataattgattg |
30372981 |
T |
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| Q |
316 |
catatcataatcgattttatatgttaatatttctcaaatctttgtaaatatgaataaattccaaacatcaagagcatgctttggatgttattttgtat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30372980 |
catatcataatcgattttatatgttaatatttctcaaatctttgtaaatatgaatagattccaaacatcaagagcatgctttggatgttattttgtat |
30372883 |
T |
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