View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_low_9 (Length: 426)
Name: NF20204_low_9
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 22 - 411
Target Start/End: Original strand, 39230095 - 39230484
Alignment:
| Q |
22 |
gcaagtataagctagtatttgttcaactctaatgttaaattgttctattacctgcctattgggaaaaatgtgcacctcgagttatcattattaggattgc |
121 |
Q |
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| T |
39230095 |
gcaagtataagctagtatttgttcaactctaatgttaaattgttctattacctgcctattgggaaaaatgtgcacctcgagttatcattattaggattgc |
39230194 |
T |
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| Q |
122 |
caaaagaattttttaaatttgatcggaggagnnnnnnnnnnnnnnnnnnngaataattgaaacactaaattgttctcgtgtttaatgaaattgctgagtg |
221 |
Q |
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| T |
39230195 |
caaaagaattttttaaatatgatcggaggagaaaaagataaaaaataaaagaataattgaaacacgaaattgttctcgtgtttaatgaaattgctgagtg |
39230294 |
T |
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| Q |
222 |
gatgtgactccgtttttacctctatttatgttgaaccgcaaatgtttctagtttgcggaagaataaaagtcatcattttgtgattatttcaaaccatcga |
321 |
Q |
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| T |
39230295 |
gatgtgactccgtttttacctctatttatgttgaaccgcaaatgtttctagttagcggaagaataaaagtcatcattttgtgattatttcaaaccatcga |
39230394 |
T |
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| Q |
322 |
ccttataagttataaacccttctcattgtaatttgtacaaaatctgcagccagacatttttacatgttgaacctttcagaagttttgttt |
411 |
Q |
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| T |
39230395 |
ccttataagttataaacccttctcattgtaatttgtacaaaatctgcagccagacatttttacatgttgaacctttcagaagttttgttt |
39230484 |
T |
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