View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20205_low_1 (Length: 401)
Name: NF20205_low_1
Description: NF20205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20205_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 3307663 - 3308041
Alignment:
| Q |
1 |
ctacaacatgatcaagatatgtccgtcaatatgaataaatttcaagacacctgtggaggtttgaagttagagctctcgattgtgtcttcattggttatcc |
100 |
Q |
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| T |
3307663 |
ctacaacatgatcaagatatgtccgtcaatatgaataaatttcaagacacctatggaggtttgaagttagagctctcgattgtgtcttcattggttatcc |
3307762 |
T |
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| Q |
101 |
tgaaggcataagggttacaagttattcaattgagtatggaacctggaggcttaagggtcatgatgagcaatgatgttacttttgatgagacttgtatgag |
200 |
Q |
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| T |
3307763 |
agaaggcataagggttacaagttattgaattgagtatggaacctggaggcttaagggtcatgatgagcaatgatgttacttttgatgagacttgtatgag |
3307862 |
T |
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| Q |
201 |
gatgaagtacaaagacttgtatgtgtttgaggatgagtttcccactagtaagaccaggtatggaaatgaggatagtattcctccagcaagttccatagta |
300 |
Q |
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| T |
3307863 |
gatgaagtacaaagacttgtatgtgtttgaggatgagtttcccactagtaagaccaggtatggaaatgaggatagtattcctccagcaagttctatagta |
3307962 |
T |
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| Q |
301 |
agacaaccaactgtggctcatgactatcagttggcaagagatcatggagaaaatgggaaaattattgcaccaaagtggtatg |
382 |
Q |
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| T |
3307963 |
agacaaccaacagtggctcatgactatcagttggcaagag---atggagaaaatgggaaaattattgcaccaaagtggtatg |
3308041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 17934541 - 17934585
Alignment:
| Q |
172 |
gatgttacttttgatgagacttgtatgaggatgaagtacaaagac |
216 |
Q |
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| T |
17934541 |
gatgttacttttgatgagacccgtatggggatgaagtgcaaagac |
17934585 |
T |
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