View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20205_low_2 (Length: 391)
Name: NF20205_low_2
Description: NF20205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20205_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 360
Target Start/End: Original strand, 34437083 - 34437433
Alignment:
| Q |
10 |
agtagcataggccaaacctctccatttgtctttgtcagtttgcttgctttcatcaatctcagcagcaacaattttgaatcttccagatgaaacctttgtg |
109 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437083 |
agtatcataggccaaacctctccatctgtctttgtcagtttgcttgctttcattaatctcagcagcaacaattttgaatcttccagatgaaacctttgtg |
34437182 |
T |
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| Q |
110 |
tttggtaacctcgaggtaactttctttaagctggttccaaagaatgatgaatttggaactgaagctactgctccagagctattcaaactcaactgcaata |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437183 |
tttggtaacctcgaggtaactttctttaagctggttccaaagaatgatgaacttggaactgaagctactgctccagagctattcaaactcaactgcaata |
34437282 |
T |
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| Q |
210 |
tcacagtattatcctatgagtcacatcggacatgacactaatacgtagacattggtaatcatttaagaaaattaaattattgaatgtaagtcaacacatg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437283 |
tcacagtattatcctatgagtcacatcggacatgacactaatacgtagacattggtaatcatttaagaaaattaaattattgaatgtaagtcaacacatg |
34437382 |
T |
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| Q |
310 |
tgtcggtagcatgttggtgtatgagacaaatacatgttagacactagacac |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437383 |
tgtcggtagcatgttggtgtatgagacaaatacatgttagacactagacac |
34437433 |
T |
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