View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20206_high_2 (Length: 352)
Name: NF20206_high_2
Description: NF20206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20206_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 3 - 339
Target Start/End: Original strand, 8006978 - 8007313
Alignment:
| Q |
3 |
cttccattgatctttgacctcgttgtctctggattcttgagcatttccaactgcaaaatttgatattataatgagataattaaaaaataataattctaga |
102 |
Q |
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| T |
8006978 |
cttccattgatcttcgacctcgttgtctctggattcttgagcatttccaactgcaaaattttatattataatgagataattaaaaaataataattctaga |
8007077 |
T |
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| Q |
103 |
tgacttaaaataccatgatgcattggtcgaatcttcaggctaaaaatatcagaaaatgaagattaagcaaggaataatgtaaaaaagactaaagtttcat |
202 |
Q |
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| T |
8007078 |
tgacttaaaataccatgatgcattggtcgaatcttcaggctaaaaatatcagaaaatgaagattaagcaaggaataatgtaaaaaagactaaagtttcat |
8007177 |
T |
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| Q |
203 |
aatgcgacgcccaacacaggattatatgcagtcacatgtgcatatatctatctaacttctannnnnnnnnnnnnnnnnnngggcaaaggaatcgacggtt |
302 |
Q |
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| T |
8007178 |
aatgcgacgcccaacacaggattatatgcagtcacaagtgtatatatctatctaacttgtatttttttcacaatttttttggacaaaggaatcgacggtt |
8007277 |
T |
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| Q |
303 |
caaaaatgaataaaaatcacatctgatggttaatatt |
339 |
Q |
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| T |
8007278 |
c-aaaatgaataaaaatcacatctgatggttaatatt |
8007313 |
T |
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