View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20206_high_6 (Length: 324)
Name: NF20206_high_6
Description: NF20206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20206_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 23852797 - 23853078
Alignment:
| Q |
20 |
actaagatacttgaactgtgaatgagcaggatggatatactgagcttcaagcttagattttgagtagggacagtttgaatcaaattgttctcctttttgt |
119 |
Q |
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| T |
23852797 |
actaagatacttgaactgtgaatgagcaggatggatatactgagcttcaagcttagattttgagtagggacagtttgaatcaaattgttctcctttttgt |
23852896 |
T |
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| Q |
120 |
gggtaacatggattcctaaggtcaatttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttccaagagg |
219 |
Q |
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| T |
23852897 |
gggtaacatggattcctaaggtcaatttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttccaagagg |
23852996 |
T |
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| Q |
220 |
aaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctctcttgttccatgcaaccaaatgatga |
301 |
Q |
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| T |
23852997 |
aaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctctcttgttccatgcaaccaaatgatga |
23853078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 115 - 301
Target Start/End: Original strand, 23752191 - 23752377
Alignment:
| Q |
115 |
tttgtgggtaacatggattcctaaggtcaatttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttcca |
214 |
Q |
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| T |
23752191 |
tttgtgggtagcatggattcctaaggtcaattttaacaacatgacctgtaatgttgctgcaacttatacctttccatttacaacattcatttccttccca |
23752290 |
T |
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| Q |
215 |
agaggaaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctctcttgttccatgcaaccaaatgatga |
301 |
Q |
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| T |
23752291 |
agaggaaagtcttaatgatgtatcattaaagcttcctttgagttcaagaagtgcttgcctctcttgttctatgcaaccaaatgatga |
23752377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 115 - 301
Target Start/End: Original strand, 22619584 - 22619770
Alignment:
| Q |
115 |
tttgtgggtaacatggattcctaaggtcaatttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttcca |
214 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
22619584 |
tttgtgggtagcatggattcctaaggtcaatttttataacatgacctgtaatgttgctgcaacttatacctttccatttacaacattcatttccttccca |
22619683 |
T |
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| Q |
215 |
agaggaaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctctcttgttccatgcaaccaaatgatga |
301 |
Q |
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| T |
22619684 |
agaggaaagtcttaatgatgtatcattaaagcttcctttgagtgctaaaagagcttgcctctcttgttctaagcaaccaaatgatga |
22619770 |
T |
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