View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20206_low_1 (Length: 670)
Name: NF20206_low_1
Description: NF20206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20206_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 576; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 13 - 652
Target Start/End: Complemental strand, 39779134 - 39778494
Alignment:
| Q |
13 |
aatatcatcaattaaatatgaagtacaatcaattttcctttttgtgaatgtttgaaaaagaaagtgtgatctccttgactttgcttatattctaaacaca |
112 |
Q |
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| T |
39779134 |
aatatcatcaattaaatttgaagtacaatcaattttcctttttgtgaatgtttaaaaaagaaagtgtgatctccttgactttgcttatagtccaaacaca |
39779035 |
T |
|
| Q |
113 |
caaattcctttatgaatctttcaaaccatgcccaatggctccactttagtccatataagatcttc-tccaaccaataatannnnnnnggtagtgtcttca |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| |
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| T |
39779034 |
caaattcctttatgaatctttcaaaccatgcccaatggctccactttagtccatataagatcttcattcaaccaataatatttttttggtagtgtcttca |
39778935 |
T |
|
| Q |
212 |
accaataatctaccactatgtttaatcactctttaacaactttattagtaactttattaagttacttgaaactggaaaatagaactagaaccggaaatct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39778934 |
accaataatctaccactatgtttaatcactctttaacaactttattagtaactttattaagttacttgaaactggaaaatagaactagaaccggaaatct |
39778835 |
T |
|
| Q |
312 |
tttctaactgaaaacctaatcgcttactatatttgtaatttgaaatcgccactctaattcaactctattccaaccctaaaccacttctctccgatcccaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39778834 |
tttctaactgaaaacctaatcgcttactatatttgtaatttgaaatcgccactctttttcaactctattccaaccctaaaacacttctctccgatcccaa |
39778735 |
T |
|
| Q |
412 |
acccttaacaacaatgcttcccctcacactctctttcaaccaggaccaaacctgcttctccgcctcaacacctacaggcttccgtgtcttcagctgcgac |
511 |
Q |
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| T |
39778734 |
acccttaacaacaatgcttcccctcacactctctttcaaccaggaccaaacctgcttctccgcctcaacacctacaggcttccgtgtcttcagctgcgac |
39778635 |
T |
|
| Q |
512 |
cctctccgccacctcttccgccgaatattccccgttgctggtttcacgcatctcgagatgcttttccagtctaacatactcgccctagtcgggaatggat |
611 |
Q |
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| T |
39778634 |
cctctccgccacctcttccgccgaatattccccggtgctggtttcacgcatctcgagatgcttttccagtctaacatactcgccctagtcgggaatggat |
39778535 |
T |
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| Q |
612 |
cacaccctcagttccctcttaacaagctcatactatgggat |
652 |
Q |
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| T |
39778534 |
cacaccctcagttccctcttaacaagctcatactatgggat |
39778494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 6382622 - 6382701
Alignment:
| Q |
36 |
tacaatcaattttcctttttgtgaatgtttgaaaaagaaagtgtgatctccttgactttgcttatattctaaacacacaa |
115 |
Q |
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|||||| | ||||||| ||||||||| ||||| || | | |||||| |||||||||||||||||| |||||||||||| |
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| T |
6382622 |
tacaattagttttcctccttgtgaatgcttgaagaaaagattgtgatttccttgactttgcttatagcctaaacacacaa |
6382701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 34416373 - 34416449
Alignment:
| Q |
13 |
aatatcatcaat-taaatatgaagtacaatcaattttcctttttgtgaatgtttgaaaaagaaagtgtgatctcctt |
88 |
Q |
| |
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||||||||||| |||||||||||||| | |||||||| | |||| |||||||||| || ||||| |||||||||| |
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| T |
34416373 |
aatatcatcaacataaatatgaagtactaacaattttcttccttgtcaatgtttgaagaacaaagtatgatctcctt |
34416449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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