View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20206_low_4 (Length: 248)

Name: NF20206_low_4
Description: NF20206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20206_low_4
NF20206_low_4
[»] chr5 (2 HSPs)
chr5 (9-248)||(24046941-24047180)
chr5 (71-248)||(31406242-31406420)
[»] chr3 (4 HSPs)
chr3 (43-236)||(1658620-1658812)
chr3 (102-161)||(13852153-13852212)
chr3 (199-248)||(4848388-4848437)
chr3 (9-60)||(1658562-1658613)
[»] chr6 (6 HSPs)
chr6 (47-248)||(14666682-14666882)
chr6 (91-235)||(14415928-14416071)
chr6 (87-233)||(11946743-11946886)
chr6 (90-158)||(17715756-17715824)
chr6 (119-235)||(14322946-14323061)
chr6 (9-60)||(14666893-14666944)
[»] scaffold0832 (1 HSPs)
scaffold0832 (91-235)||(4-147)
[»] chr7 (1 HSPs)
chr7 (91-235)||(9238049-9238191)
[»] chr8 (4 HSPs)
chr8 (93-235)||(28244702-28244843)
chr8 (103-140)||(45349374-45349411)
chr8 (207-244)||(17629762-17629799)
chr8 (9-60)||(45349486-45349537)
[»] scaffold0838 (1 HSPs)
scaffold0838 (119-235)||(1-116)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 24046941 - 24047180
Alignment:
Q  9 gatgaatgatggagtgaaattcatcggtgaagcttgacggtggtcgagggtgagcgacggtggaaaagtggctctgctgaattgagatctcattgagaga 108  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||  | |||||    
T  24046941 gatgaatgacggtgtgaaattcatcggtgaagcttgacggtggtcgagggtgtgcgacggtggaaaagtggttctgctgaattgagatctcggtaagaga 24047040  T
Q  109 gaaaagtgatttttgagggaagagagagaaaagtgtttctcaatagcttataacacnnnnnnnnacttattttaatttgtctattgttaactaaaatttt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| ||||||||||||||||||||    
T  24047041 gaaaagtgatttttgagggaagagagagaaaagtgtttctcaatagcttataacacatttttttacttattttaatttgactattgttaactaaaatttt 24047140  T
Q  209 taacacgtgaataaataatgaatgggttctattgttactt 248  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24047141 taacacgtgaataaataatgaatgggttctattgttactt 24047180  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 248
Target Start/End: Complemental strand, 31406420 - 31406242
Alignment:
Q  71 gaaaagtggctctgctgaattgagatctcattgagagaga--aaagtgatttttgagggaagagagagaaaagtgtttctcaatagcttataacacnnnn 168  Q
    ||||| ||| |||| ||||||||||||||  |||||||||  |||||| |||||||||||||||||||||||||||||||||||  ||||||||||        
T  31406420 gaaaaatggttctgttgaattgagatctcggtgagagagagaaaagtgttttttgagggaagagagagaaaagtgtttctcaatgtcttataacac-ttt 31406322  T
Q  169 nnnnacttattttaatttgtctattgttaactaaaatttttaacacgtgaataaataatgaatgggttctattgttactt 248  Q
        || ||||||  |||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  31406321 ttttacctattttgttttgactattgttgactaaaatttttaacacgtgaatgaataatgaatgggttctgttgttactt 31406242  T

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Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 43 - 236
Target Start/End: Original strand, 1658620 - 1658812
Alignment:
Q  43 tgacggtggtcgagggtgagcgacggtggaaaagtggctctgctgaattgagatctcattgagagagaaaagtgatttttgagggaagagagagaaaagt 142  Q
    ||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  1658620 tgacggtggtcgaaggtgtgcgacggtggaaaagtggttctgctgaattgagatctcggtgagagagaaaagtgatttttgagggaagagagagaaaagt 1658719  T
Q  143 gtttctcaatagcttataacacnnnnnnnnacttattttaatttgtctattgttaactaaaatttttaacacgtgaataaataatgaatgggtt 236  Q
    |||||||||| |||||||||||        |||| ||||| |||| |||||||| |||||| ||||||||| |||||| |||||||||||||||    
T  1658720 gtttctcaattgcttataacac-tttttttactttttttattttgactattgttgactaaattttttaacatgtgaatgaataatgaatgggtt 1658812  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 13852153 - 13852212
Alignment:
Q  102 tgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatagcttataa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  13852153 tgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatggtttataa 13852212  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 4848437 - 4848388
Alignment:
Q  199 ctaaaatttttaacacgtgaataaataatgaatgggttctattgttactt 248  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||||||||||    
T  4848437 ctaaattttttaacacgtgaatgaataacgaatgagttctattgttactt 4848388  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 1658562 - 1658613
Alignment:
Q  9 gatgaatgatggagtgaaattcatcggtgaagcttgacggtggtcgagggtg 60  Q
    ||||||||| || ||||||||| |||||||||||| ||||||||||| ||||    
T  1658562 gatgaatgacggtgtgaaattcgtcggtgaagcttaacggtggtcgatggtg 1658613  T

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Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 47 - 248
Target Start/End: Complemental strand, 14666882 - 14666682
Alignment:
Q  47 ggtggtcgagggtgagcgacggtggaaaagtggctctgctgaattgagatctcattgagagagaaaagtgatttttgagggaagagagagaaaagtgttt 146  Q
    ||||||| |||||| ||||| |||||||||||| | |||| ||||||||||||  ||||||||||||||||||||| ||| |||||||||||||||||||    
T  14666882 ggtggtcaagggtgtgcgacagtggaaaagtggttatgctaaattgagatctcggtgagagagaaaagtgattttttaggtaagagagagaaaagtgttt 14666783  T
Q  147 ctcaatagcttataacacnnnnnnnnacttattttaatttgtctattgttaactaaaatttttaacacgtgaataaataatgaatgggttctattgttac 246  Q
    || ||| |||||||||||        |||||||||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14666782 ctgaatggcttataacac-tttttttacttattttattttgactattgttgactaaaatttttaacacgtgaatgaataatgaatgggttctattgttac 14666684  T
Q  247 tt 248  Q
    ||    
T  14666683 tt 14666682  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 14415928 - 14416071
Alignment:
Q  91 tgagatctcattgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatagcttataacacnnnnnnnnacttattttaatttgtct 190  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||        | |||||||| |||| ||    
T  14415928 tgagatctctgtgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaattgtttataatac-tttttttatttattttattttgact 14416026  T
Q  191 attgttaactaaaatttttaacacgtgaataaataatgaatgggt 235  Q
    |||||| || ||||  |||||||||||||| ||||||||||||||    
T  14416027 attgttgaccaaaaaatttaacacgtgaatgaataatgaatgggt 14416071  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 233
Target Start/End: Complemental strand, 11946886 - 11946743
Alignment:
Q  87 gaattgagatctcattgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctc-aatagcttataacacnnnnnnnnacttattttaatt 185  Q
    |||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||| ||| | |||||| ||        | |||||||| ||    
T  11946886 gaattgagatctc---gagagagaaaggtgatttttgagggaagagagagaaaagtgtttctcaaatggtttataatac-tttatttatttattttattt 11946791  T
Q  186 tgtctattgttaactaaaatttttaacacgtgaataaataatgaatgg 233  Q
    || |||||||| || ||||  |||||||||||||| ||||||||||||    
T  11946790 tgactattgttgaccaaaaaatttaacacgtgaatgaataatgaatgg 11946743  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 17715824 - 17715756
Alignment:
Q  90 ttgagatctcattgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatagctta 158  Q
    ||||||||||  ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  17715824 ttgagatctcggtgagagagaaaagagatttttgacggaagagagagaaaagtgtttctcaatggctta 17715756  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 14322946 - 14323061
Alignment:
Q  119 ttttgagggaagagagagaaaagtgtttctcaatagcttataacacnnnnnnnnacttattttaatttgtctattgttaactaaaatttttaacacgtga 218  Q
    |||||||||||||||||||||||||||||||||| | |||||| ||        | |||||||| |||| |||||||| || ||||  ||||||||||||    
T  14322946 ttttgagggaagagagagaaaagtgtttctcaattgtttataatac-tttttttatttattttattttgactattgttgaccaaaaaatttaacacgtga 14323044  T
Q  219 ataaataatgaatgggt 235  Q
    || ||||||||||||||    
T  14323045 atgaataatgaatgggt 14323061  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 14666944 - 14666893
Alignment:
Q  9 gatgaatgatggagtgaaattcatcggtgaagcttgacggtggtcgagggtg 60  Q
    ||||||||| || ||||||||| |||||||| ||||||||||||||| ||||    
T  14666944 gatgaatgacggtgtgaaattcgtcggtgaaacttgacggtggtcgatggtg 14666893  T

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Target: scaffold0832 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 4 - 147
Alignment:
Q  91 tgagatctcattgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatagcttataacacnnnnnnnnacttattttaatttgtct 190  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||        | |||||||| |||| ||    
T  4 tgagatctctgtgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaattgtttataatac-tttttttatttattttattttgact 102  T
Q  191 attgttaactaaaatttttaacacgtgaataaataatgaatgggt 235  Q
    |||||| || ||||  |||||||| ||||| ||||||||||||||    
T  103 attgttgaccaaaaaatttaacacttgaatgaataatgaatgggt 147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 9238191 - 9238049
Alignment:
Q  91 tgagatctcattgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatagcttataacacnnnnnnnnacttattttaatttgtct 190  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||        | |||||||| |||| ||    
T  9238191 tgagatctctgtgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatagtttataatac-tttttttatttattttattttgact 9238093  T
Q  191 attgttaactaaaatttttaacacgtgaataaataatgaatgggt 235  Q
    |||||| || ||||  |||||||||||||| |||||| |||||||    
T  9238092 attgttgac-aaaaaatttaacacgtgaatgaataataaatgggt 9238049  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 235
Target Start/End: Complemental strand, 28244843 - 28244702
Alignment:
Q  93 agatctcattgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatagcttataacacnnnnnnnnacttattttaatttgtctat 192  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||        | |||||||| ||||  |||    
T  28244843 agatctctatgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatggtttataatac-tttttttatttattttattttgattat 28244745  T
Q  193 tgttaactaaaatttttaacacgtgaataaataatgaatgggt 235  Q
    |||| || ||||  |||||||||||||| ||||||||||||||    
T  28244744 tgttgaccaaaaaatttaacacgtgaatgaataatgaatgggt 28244702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 45349411 - 45349374
Alignment:
Q  103 gagagagaaaagtgatttttgagggaagagagagaaaa 140  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45349411 gagagagaaaagtgatttttgagggaagagagagaaaa 45349374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 17629799 - 17629762
Alignment:
Q  207 tttaacacgtgaataaataatgaatgggttctattgtt 244  Q
    |||||||||||| |||||||||||||||||||||||||    
T  17629799 tttaacacgtgagtaaataatgaatgggttctattgtt 17629762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 45349537 - 45349486
Alignment:
Q  9 gatgaatgatggagtgaaattcatcggtgaagcttgacggtggtcgagggtg 60  Q
    ||||||||| || ||||||||| ||||||||| |||||||||||||| ||||    
T  45349537 gatgaatgacggtgtgaaattcgtcggtgaagtttgacggtggtcgatggtg 45349486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0838 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 1 - 116
Alignment:
Q  119 ttttgagggaagagagagaaaagtgtttctcaatagcttataacacnnnnnnnnacttattttaatttgtctattgttaactaaaatttttaacacgtga 218  Q
    |||||||||||||||||||||||||||||||||| | |||||| ||        | |||||||| |||| |||||||| || ||||  |||||||| |||    
T  1 ttttgagggaagagagagaaaagtgtttctcaattgtttataatac-tttttttatttattttattttgactattgttgaccaaaaaatttaacacttga 99  T
Q  219 ataaataatgaatgggt 235  Q
    || ||||||||||||||    
T  100 atgaataatgaatgggt 116  T

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