View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20207_high_2 (Length: 335)
Name: NF20207_high_2
Description: NF20207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20207_high_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 335
Target Start/End: Original strand, 33827961 - 33828285
Alignment:
| Q |
11 |
ataggccatacaatcaatacagtaagaaactctttctgggaaaacggtttcgatatcatatgcgacagatgaacagcttccactgtaatgatgataatgc |
110 |
Q |
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| T |
33827961 |
ataggccatacaatcaatacagtaagaaactctttctgggaaaacggtttcgatatcatatgcgacagatgaacagcttccactgtaatgatgataatgc |
33828060 |
T |
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| Q |
111 |
gtgattttggaattggaagtgagattttaatgctgcaatgataaattttacacggtgcaagaagtcagtaatgatgtagttttgaaatcatccggtaatg |
210 |
Q |
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| T |
33828061 |
gtgattttggaattggaagtgagattttaatgctgcaatgataaattttacacggtgcaagaagtcagtaatgatgtagttttgaaatcatccggtaatg |
33828160 |
T |
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| Q |
211 |
gctgaaaagttattaaaacaattatagttaatatgagaggaattatttgattaagttggtgatataacttaaacaggtttatggttaaaaagaaattaaa |
310 |
Q |
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| T |
33828161 |
gctgaaaaattattaaaacaattatagttaatatgagaggaattatttgattaagttggtgatataacttaaacaggtttatggttaaaaagaaattaaa |
33828260 |
T |
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| Q |
311 |
aacttatgtatatcttaatgaaaaa |
335 |
Q |
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| T |
33828261 |
aacttatgtatgtcttaacgaaaaa |
33828285 |
T |
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