View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20207_low_2 (Length: 291)
Name: NF20207_low_2
Description: NF20207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20207_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 20171344 - 20171589
Alignment:
| Q |
1 |
tgcaatgtataaggaacccaaaacgaatcatatatgtttgtctgctttaaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaac |
100 |
Q |
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| T |
20171344 |
tgcaatgtctaaggaacccaaaacgaatcatatatgtttgt--gctttaaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaac |
20171441 |
T |
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| Q |
101 |
aaggaaataatcacaagccatcttaatgtctatgttcgtttgaattgagaatatttgggtcccacgtgcttacgggctagctctaataatgtacggtgtt |
200 |
Q |
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| T |
20171442 |
aaggaaataatcacaagccatcttaatgtctatgttcgtttgaattgagaatatttgggtcccacgtgcttacgggctagctctaataatgtacggtgtt |
20171541 |
T |
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| Q |
201 |
tgatcccttttcaattgcgtggaattgctgatttgtatgagtgcacgt |
248 |
Q |
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| T |
20171542 |
tgatcccttttcaattgcgtggaattgctgatttgtacgagtgcacgt |
20171589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 44393054 - 44393299
Alignment:
| Q |
1 |
tgcaatgtataaggaacccaaaacgaatcatatatgtttgtctgctttaaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaac |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44393054 |
tgcaatgtctaaggaacccaaaacgaatcatatatgtttgt--gctttaaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaac |
44393151 |
T |
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| Q |
101 |
aaggaaataatcacaagccatcttaatgtctatgttcgtttgaattgagaatatttgggtcccacgtgcttacgggctagctctaataatgtacggtgtt |
200 |
Q |
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| T |
44393152 |
aaggaaataatcacaagccatcttaatgtctatgttcgtttgaattgagaatatttgggtcccacgtgcttacgggctagctctaataatgtacggtgtt |
44393251 |
T |
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| Q |
201 |
tgatcccttttcaattgcgtggaattgctgatttgtatgagtgcacgt |
248 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44393252 |
tgatcccttttcaattgcgtggaattgctgatttgtacgagtgcacgt |
44393299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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