View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20208_high_11 (Length: 299)

Name: NF20208_high_11
Description: NF20208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20208_high_11
NF20208_high_11
[»] chr8 (16 HSPs)
chr8 (1-284)||(15751217-15751500)
chr8 (135-284)||(13033603-13033752)
chr8 (135-275)||(15066928-15067068)
chr8 (135-275)||(15214372-15214512)
chr8 (135-281)||(4506380-4506526)
chr8 (6-77)||(14348038-14348109)
chr8 (119-261)||(15052713-15052855)
chr8 (205-258)||(15000421-15000474)
chr8 (1-61)||(15000217-15000277)
chr8 (1-68)||(4506593-4506660)
chr8 (217-275)||(15047728-15047786)
chr8 (167-280)||(15165123-15165236)
chr8 (1-92)||(15214555-15214646)
chr8 (175-261)||(15029944-15030030)
chr8 (1-90)||(15066794-15066883)
chr8 (167-280)||(15076907-15077020)
[»] chr7 (2 HSPs)
chr7 (1-284)||(1626552-1626835)
chr7 (1-284)||(1618002-1618270)


Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 15751217 - 15751500
Alignment:
Q  1 aagtcaattaaggaatccaattgtaagataatttacatatgcaggaacccttttgacacttatgtgtcatattggaattttatgaacaaaatttcattaa 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15751217 aagtcaatcaaggaatccaattgtaagataatttacatatgcaggaacccttttgacacttacgtgtcatattggaattttatgaacaaaatttcattaa 15751316  T
Q  101 attttgattttcctacaataactatagaggatgattttgaaaggtattgtaaggggatatgtcatgttggttcattttgggaccatgtgttaggctattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15751317 attttgattttcctacaataactatagaggatgattttgaaaggtattgtaaggggatatgtcatgttggttcattttgggaccatgtgttaggctattt 15751416  T
Q  201 gaacgagagcatagctagaccagacaaggttttattcttgaaatatgaagatcttaaagaaaatggaaattttcatgtcaaaag 284  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  15751417 gaacgagagcatagctagaccagacaaggttttattcatgaaatatgaagatcttaaagaaaatggaaattctcatgtcaaaag 15751500  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 135 - 284
Target Start/End: Original strand, 13033603 - 13033752
Alignment:
Q  135 ttttgaaaggtattgtaaggggatatgtcatgttggttcattttgggaccatgtgttaggctatttgaacgagagcatagctagaccagacaaggtttta 234  Q
    ||||||||||||||||||||| ||||||    ||||| | ||||||||| || |||| || || ||||| ||||| ||||  |||||| | |||||||||    
T  13033603 ttttgaaaggtattgtaagggaatatgtttatttggtccgttttgggacaatatgttgggttacttgaaggagagtatagaaagaccacataaggtttta 13033702  T
Q  235 ttcttgaaatatgaagatcttaaagaaaatggaaattttcatgtcaaaag 284  Q
    ||||||||||||||||| ||||||||| |||  ||||||||  |||||||    
T  13033703 ttcttgaaatatgaagaccttaaagaagatgttaattttcacatcaaaag 13033752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 15066928 - 15067068
Alignment:
Q  135 ttttgaaaggtattgtaaggggatatgtcatgttggttcattttgggaccatgtgttaggctatttgaacgagagcatagctagaccagacaaggtttta 234  Q
    |||||||||||| |||||||| ||||||  | ||||| | || |||||| || |||| || || ||||| ||||||||||  |||||||| | |||||||    
T  15066928 ttttgaaaggtactgtaagggaatatgtttttttggtccgttctgggacaatatgttgggttacttgaaggagagcatagaaagaccagatagggtttta 15067027  T
Q  235 ttcttgaaatatgaagatcttaaagaaaatggaaattttca 275  Q
    ||||||||||||||||| ||||||||| |||  ||||||||    
T  15067028 ttcttgaaatatgaagaccttaaagaagatgttaattttca 15067068  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 15214512 - 15214372
Alignment:
Q  135 ttttgaaaggtattgtaaggggatatgtcatgttggttcattttgggaccatgtgttaggctatttgaacgagagcatagctagaccagacaaggtttta 234  Q
    ||||||||||||||||||||| ||||||    ||||| | ||||||||  || |||| || || ||||| ||||||||||  |||||||| | |||||||    
T  15214512 ttttgaaaggtattgtaagggaatatgtttatttggtccgttttgggataatatgttgggttacttgaaggagagcatagaaagaccagatagggtttta 15214413  T
Q  235 ttcttgaaatatgaagatcttaaagaaaatggaaattttca 275  Q
    ||||||||||||||||| ||||||||| |||  ||||||||    
T  15214412 ttcttgaaatatgaagaccttaaagaagatgttaattttca 15214372  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 135 - 281
Target Start/End: Complemental strand, 4506526 - 4506380
Alignment:
Q  135 ttttgaaaggtattgtaaggggatatgtcatgttggttcattttgggaccatgtgttaggctatttgaacgagagcatagctagaccagacaaggtttta 234  Q
    ||||||||| |||||| | |||||| |||   |||||||||||||||| |||  ||| || || ||||| || ||||| |||||| || |||| ||| ||    
T  4506526 ttttgaaagttattgtgatgggataagtccatttggttcattttgggatcataagttgggttacttgaaggaaagcatggctagatcacacaaagttcta 4506427  T
Q  235 ttcttgaaatatgaagatcttaaagaaaatggaaattttcatgtcaa 281  Q
    |||||||||||||||||| ||||||| |||| || |||||| |||||    
T  4506426 ttcttgaaatatgaagatgttaaagagaatgcaatttttcaagtcaa 4506380  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 14348109 - 14348038
Alignment:
Q  6 aattaaggaatccaattgtaagataatttacatatgcaggaacccttttgacacttatgtgtcatattggaa 77  Q
    |||||| || |||||||||||||||||||||||||| | |||||| |||||||||||||| |||||| ||||    
T  14348109 aattaaagagtccaattgtaagataatttacatatgtatgaacccatttgacacttatgtatcatataggaa 14348038  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 261
Target Start/End: Original strand, 15052713 - 15052855
Alignment:
Q  119 taactatagaggatgattttgaaaggtattgtaaggggatatgtcatgttggttcattttgggaccatgtgttaggctatttgaacgagagcatagctag 218  Q
    ||||| ||||||| | ||||||||||||||||||||| ||||||    ||||| | ||||||||  || |||| || || || || || |||||||  ||    
T  15052713 taactttagaggaagcttttgaaaggtattgtaagggaatatgtatatttggtccgttttgggagaatatgttgggttacttcaaggaaagcatagaaag 15052812  T
Q  219 accagacaaggttttattcttgaaatatgaagatcttaaagaa 261  Q
    |||| | | |||||||||||||||||||||||| |||||||||    
T  15052813 accatatagggttttattcttgaaatatgaagaccttaaagaa 15052855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 15000421 - 15000474
Alignment:
Q  205 gagagcatagctagaccagacaaggttttattcttgaaatatgaagatcttaaa 258  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||| ||||||    
T  15000421 gagagcatagctagaccaggcaaggttttattcttgaactatgaagaacttaaa 15000474  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15000217 - 15000277
Alignment:
Q  1 aagtcaattaaggaatccaattgtaagataatttacatatgcaggaacccttttgacactt 61  Q
    ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||  |||||||||    
T  15000217 aagtcaattaaggaatccaattgtaagatcatttatatatgtaggaatccacttgacactt 15000277  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4506660 - 4506593
Alignment:
Q  1 aagtcaattaaggaatccaattgtaagataatttacatatgcaggaacccttttgacacttatgtgtc 68  Q
    ||||||||||| || ||||||||||| |||||||| ||||| || || ||||||||||||| ||||||    
T  4506660 aagtcaattaaagagtccaattgtaaaataatttatatatgtagaaatccttttgacacttttgtgtc 4506593  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 15047728 - 15047786
Alignment:
Q  217 agaccagacaaggttttattcttgaaatatgaagatcttaaagaaaatggaaattttca 275  Q
    |||||| | |||||||||||||||||||||||||| ||||||||| |||  ||||||||    
T  15047728 agaccacataaggttttattcttgaaatatgaagaccttaaagaagatgttaattttca 15047786  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 280
Target Start/End: Complemental strand, 15165236 - 15165123
Alignment:
Q  167 ttggttcattttgggaccatgtgttaggctatttgaacgagagcatagctagaccagacaaggttttattcttgaaatatgaagatcttaaagaaaatgg 266  Q
    |||||||||||||||| |||   ||||| || ||||| || || ||  |||| ||||||||  ||||||| |||||||||||||| ||||||||| ||      
T  15165236 ttggttcattttgggagcatactttaggttacttgaaagaaagtatgactagtccagacaaaattttatttttgaaatatgaagaacttaaagaagatcc 15165137  T
Q  267 aaattttcatgtca 280  Q
    || |||||||||||    
T  15165136 aatttttcatgtca 15165123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 15214646 - 15214555
Alignment:
Q  1 aagtcaattaaggaatccaattgtaagataatttacatatgcaggaacccttttgacacttatgtgtcatattggaattttatgaacaaaat 92  Q
    |||||| |||| || ||||||||||| |||||||| ||||| || ||||| ||||| || | ||| |||||||||| ||| || ||||||||    
T  15214646 aagtcagttaaagagtccaattgtaaaataatttatatatgtagaaacccatttgatacatttgtatcatattggattttcatcaacaaaat 15214555  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 15029944 - 15030030
Alignment:
Q  175 ttttgggaccatgtgttaggctatttgaacgagagcatagctagaccagacaaggttttattcttgaaatatgaagatcttaaagaa 261  Q
    |||||||| ||| |||| || || ||||| |||||||||  ||||||  | ||| |||||||||||||||| ||||| |||||||||    
T  15029944 ttttgggatcatatgttgggttacttgaaggagagcataattagacctaataagattttattcttgaaatacgaagaccttaaagaa 15030030  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 15066794 - 15066883
Alignment:
Q  1 aagtcaattaaggaatccaattgtaagataatttacatatgcaggaacccttttgacacttatgtgtcatattggaattttatgaacaaa 90  Q
    ||||||||| | || ||||||||||| |||||||| ||||| || ||||| ||||| || | ||| |||||||||| ||| || ||||||    
T  15066794 aagtcaattcaagagtccaattgtaaaataatttatatatgtagaaacccatttgatacatttgtatcatattggactttcatcaacaaa 15066883  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 280
Target Start/End: Original strand, 15076907 - 15077020
Alignment:
Q  167 ttggttcattttgggaccatgtgttaggctatttgaacgagagcatagctagaccagacaaggttttattcttgaaatatgaagatcttaaagaaaatgg 266  Q
    |||||||||||||||| |||   ||||| || ||||| || || ||   ||| |||||||| ||| |||| |||||||||||||| ||||||||| ||      
T  15076907 ttggttcattttgggagcataatttaggttacttgaaagaaagtatgattaggccagacaaagttatatttttgaaatatgaagaacttaaagaagatcc 15077006  T
Q  267 aaattttcatgtca 280  Q
    || |||||||||||    
T  15077007 aatttttcatgtca 15077020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 1626835 - 1626552
Alignment:
Q  1 aagtcaattaaggaatccaattgtaagataatttacatatgcaggaacccttttgacacttatgtgtcatattggaattttatgaacaaaatttcattaa 100  Q
    ||||| ||||| || |||||||||||||||||||||||||| |||||||| |||||||||| |||||| ||||||||||| |||||||||||| ||||||    
T  1626835 aagtctattaaagagtccaattgtaagataatttacatatgtaggaacccatttgacacttttgtgtcttattggaatttcatgaacaaaattgcattaa 1626736  T
Q  101 attttgattttcctacaataactatagaggatgattttgaaaggtattgtaaggggatatgtcatgttggttcattttgggaccatgtgttaggctattt 200  Q
    ||     ||| ||||||  |||| ||||||||||||||||||  |||||| ||||  |||||||||||||| |||||||||||||| |||| || || ||    
T  1626735 atcaatctttacctacatcaactttagaggatgattttgaaaaatattgtgagggattatgtcatgttggtccattttgggaccatatgttgggttactt 1626636  T
Q  201 gaacgagagcatagctagaccagacaaggttttattcttgaaatatgaagatcttaaagaaaatggaaattttcatgtcaaaag 284  Q
    ||| ||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| ||  |||||||||||| |||||    
T  1626635 gaaggagagcaaagctagaccaaacaagattttattcttgaaatatgaagatcttaaagaagatataaattttcatgttaaaag 1626552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 1618270 - 1618002
Alignment:
Q  1 aagtcaattaaggaatccaattgtaagataatttacatatgcaggaacccttttgacacttatgtgtcatattggaattttatgaacaaaatttcattaa 100  Q
    ||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||| |||||| ||||||||||| ||||||||||||  |||||    
T  1618270 aagtcaattaaagaatccaattgtaagataatttacatatgtagaaacccatttgacacttttgtgtcttattggaatttcatgaacaaaattgaattaa 1618171  T
Q  101 attttgattttcctacaataactatagaggatgattttgaaaggtattgtaaggggatatgtcatgttggttcattttgggaccatgtgttaggctattt 200  Q
    ||             ||||  || ||||||||||||||||||| |||||||| |||||||||||||||||| |||| ||||||||| |||| || || ||    
T  1618170 at-------------caat--ctttagaggatgattttgaaagatattgtaaagggatatgtcatgttggtccattctgggaccatatgttgggttactt 1618086  T
Q  201 gaacgagagcatagctagaccagacaaggttttattcttgaaatatgaagatcttaaagaaaatggaaattttcatgtcaaaag 284  Q
    ||| |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||  |||||||||||| |||||    
T  1618085 gaaggagagcatagctagaccaaacaagattttattcttgcaatatgaagatcttaaagaagatataaattttcatgtgaaaag 1618002  T

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