View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20208_high_5 (Length: 489)
Name: NF20208_high_5
Description: NF20208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20208_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 26125782 - 26126042
Alignment:
| Q |
1 |
tggaatattgcatggtgagttaattaagtgtttaataataaagtggcaaaaaactttaagcataaggtaacattctagagtaaat--cggaaaggatttt |
98 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26125782 |
tggaatatttcatggtgagttaattaaatgtttaataataaagtggcaaaaaactttaagcataaggtaacattctagagtaaatatcggaaaggatttt |
26125881 |
T |
|
| Q |
99 |
tctcagatcatgggataatattattgtctttcagaaagatgataactatcttggaaaattcttaatgaagttatcatgaactttgatggagtcatggttt |
198 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
26125882 |
tctcatgtcatggtataatattattgtctttcagaaagatgataactatcttggaaaattcttaatgaagttatcatgaactttgatgcagttatggttt |
26125981 |
T |
|
| Q |
199 |
tgtttacacaacatgctatcaactcacttatgtcaatgttaagttaaatacttatacttga |
259 |
Q |
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| T |
26125982 |
tgtttacacaacatgctatcaactcacttatgtcaatgttaagttaaatacttatacttga |
26126042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 293 - 473
Target Start/End: Original strand, 26126075 - 26126255
Alignment:
| Q |
293 |
aagaaaaagtaatttatcttgagacaaaagttgtatgtaaattaggagataaatttatagaaattagaccttttaagtagaaagttgcatgaaaagttag |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26126075 |
aagaaaaagtaatttatcttgagacaaaagttgtatgtaaattaggagataaatttattgaaattagaccttttaagtagaaagttgcatgaaaagttag |
26126174 |
T |
|
| Q |
393 |
tttaccaactcaatattaaagcgatgaagaatgctaaaagtaaggtagctagcgtagtgacataatttagatagtggtata |
473 |
Q |
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| T |
26126175 |
tttaccaactcaatattaaagcgatgaagaatgctaaaagtaaggtagctagtgtagtgacataatttaggtagtggtata |
26126255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 26127544 - 26127727
Alignment:
| Q |
1 |
tggaatattgcatggtgagttaattaagtgtttaataataaagtggcaaaaaactttaagcataaggtaacattctagagtaaatcggaaaggatttttc |
100 |
Q |
| |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||| ||||| |||||| ||||||| |
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| T |
26127544 |
tggaatattgcatgatgagttaattaagcatttaataataaagtggcaaaaaacttgaaggataaggtaacatactagcataaattggaaagaatttttc |
26127643 |
T |
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| Q |
101 |
tcagatcatgggataatattattgtctttcagaaagatgataactatcttggaaaattcttaatgaagttatcatgaactttga |
184 |
Q |
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| T |
26127644 |
tcacgtcatgtgataattctattgtctttcgaaaagatgatgactatcttggaaaattcttaataaagttattatgaaccttga |
26127727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 26126660 - 26126919
Alignment:
| Q |
1 |
tggaatattgcatggtgagttaattaagtgtttaataataaagtggcaaaaaactttaagcataaggtaacattctagagtaaatcggaaaggatttttc |
100 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||| ||||| ||| ||| ||| ||| ||||||||| |||| ||||| ||||| || || || |
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| T |
26126660 |
tggaatattgcatggtgagttaattaagtatttaataatgaagtgacaataaatcataaacatcaggtaacatactagcttaaattggaaacgaattctc |
26126759 |
T |
|
| Q |
101 |
tcagatcatgggataatattattgtctttcagaaagatgataa-ctatcttggaaaattcttaatgaagttatcatgaactttgatggagtcatggtttt |
199 |
Q |
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| | ||| | |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| | | | | ||||| |
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| T |
26126760 |
ttatgtcacgttataaatttattgtctttcagaaagatgataaactatcttggaaaattcttaatgaatttatcatgaacattgaggcatttaccgtttt |
26126859 |
T |
|
| Q |
200 |
gtttacacaacatgctatcaactcacttatgtcaatgttaagttaaatacttatacttga |
259 |
Q |
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|||||||||||| |||||||| ||| ||||| ||| |||||| |||||||| ||| |||| |
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| T |
26126860 |
gtttacacaacaagctatcaaatcatttatgccaaagttaagctaaatactgatatttga |
26126919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 297 - 473
Target Start/End: Original strand, 26127839 - 26128012
Alignment:
| Q |
297 |
aaaagtaatttatcttgagacaaaagttgtatgtaaattaggagataaatttatagaaattagaccttttaagtagaaagttgcatgaaaagttagttta |
396 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||| |||| ||||| || ||||||||||||| ||| |||||||||| | |||||||||| |
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| T |
26127839 |
aaaaggaatttatcttgagacaaaagttgtatgaaaattatgaga-aaattcatt--aattagaccttttgtgtaataagttgcatggagagttagttta |
26127935 |
T |
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| Q |
397 |
ccaactcaatattaaagcgatgaagaatgctaaaagtaaggtagctagcgtagtgacataatttagatagtggtata |
473 |
Q |
| |
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||||||||||||||||| || ||||||| |||||||||||||| |||||||||||||||||||||| ||| |||||| |
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| T |
26127936 |
ccaactcaatattaaagtgacgaagaatactaaaagtaaggtaactagcgtagtgacataatttaggtagaggtata |
26128012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 26124909 - 26125158
Alignment:
| Q |
1 |
tggaatattgcatggtgagttaattaagtgtttaataataaagtggcaaaaaactttaagcataaggtaacattctagagtaaatcggaaaggatttttc |
100 |
Q |
| |
|
||||||||||||||| |||||||||| | ||||||| |||||| ||| ||| ||||| |||||||||| || ||||||||||| | |||||| || || |
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| T |
26124909 |
tggaatattgcatggagagttaattatgcatttaatattaaagtcacaataaattttaatcataaggtaatatactagagtaaattgaaaaggaattctc |
26125008 |
T |
|
| Q |
101 |
tcagatcatgggataatattattgtctttcagaaagatgataactatcttggaaaattcttaatgaagttatcatgaactttgatggagtcatggttttg |
200 |
Q |
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|| || | |||||| | |||||||||| ||||||| | | | ||| || |||||||||||||| |||||||||| |||| | | | || |||||| |
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| T |
26125009 |
acaatgcacgagataatttcattgtctttcggaaagataaacattgtctcgggaaattcttaatgaacttatcatgaagcttgaggcatttatcgttttg |
26125108 |
T |
|
| Q |
201 |
tttacacaacatgctatcaactcacttatgtcaatgttaagttaaatact |
250 |
Q |
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||||| |||||||||||||| ||| ||||| ||||||||| |||||||| |
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| T |
26125109 |
tttacccaacatgctatcaaatcatttatgccaatgttaatctaaatact |
26125158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 316 - 473
Target Start/End: Original strand, 26125221 - 26125378
Alignment:
| Q |
316 |
acaaaagttgtatgtaaattaggagataaatttatagaaattagaccttttaagtagaaagttgcatgaaaagttagtttaccaactcaatattaaagcg |
415 |
Q |
| |
|
||||||||| || | ||||||||||| ||| | || ||||||| |||||| ||| || ||||||| | ||||| |||||||||||||||||||| | |
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| T |
26125221 |
acaaaagttatacgaaaattaggagaaaaagtaatttaaattaggccttttgtgtaaaatgttgcatagagagttaacttaccaactcaatattaaagtg |
26125320 |
T |
|
| Q |
416 |
atgaagaatgctaaaagtaaggtagctagcgtagtgacataatttagatagtggtata |
473 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||| |||||||||| ||||| |||| |
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|
| T |
26125321 |
atgaataatgctaaaagtacaatagctagcatagtttcataatttaggtagtgctata |
26125378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 308 - 458
Target Start/End: Original strand, 26126967 - 26127117
Alignment:
| Q |
308 |
atcttgagacaaaagttgtatgtaaattaggagataaattt-atagaaattagaccttttaagtagaaagttgcatgaaaagttagtttaccaa-ctcaa |
405 |
Q |
| |
|
||||||||||||||||||| || || |||| ||| |||||| ||| |||||||||||||| ||| ||||||||| ||| | | ||||| |||| ||||| |
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| T |
26126967 |
atcttgagacaaaagttgtgtgaaagttagcagaaaaatttgata-aaattagaccttttgtgtaaaaagttgcaagaagaataagtttcccaaactcaa |
26127065 |
T |
|
| Q |
406 |
tattaaagcgatgaagaatgctaaaagtaaggtagctagcgtagtgacataat |
458 |
Q |
| |
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|
| T |
26127066 |
t-ttaaaatgacgaagaatgctaaaattaacgtagctaacgtagtggcataat |
26127117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 458
Target Start/End: Original strand, 26124441 - 26124492
Alignment:
| Q |
407 |
attaaagcgatgaagaatgctaaaagtaaggtagctagcgtagtgacataat |
458 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||| || |||||| |
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|
| T |
26124441 |
attaaagcgatgaagaatgctaaaagtaaggtagcttgcgtattggcataat |
26124492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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