View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20208_low_10 (Length: 335)
Name: NF20208_low_10
Description: NF20208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20208_low_10 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 333
Target Start/End: Original strand, 2759239 - 2759560
Alignment:
| Q |
12 |
gcccaaaagaagaactatatggttggttattggagggtgtagccgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2759239 |
gcccaaaagaagaactatatggttggttattggagggttcagctgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgc |
2759338 |
T |
|
| Q |
112 |
caagctagtttttgacagccaaaaggtaacaacacagtttgattgtcaagcttgcattgtagtttctcaatcatacactgtgagaggattactgataaaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2759339 |
caagctagtttttgacagccaaaaggtaacaacacagtttgattgtcaagcttgcatcgtagtttctcaatcatacactgtgagaggattactgataaaa |
2759438 |
T |
|
| Q |
212 |
atgatggcgcaattttgtcaggaaactgaagaccctcttccaaagaagttacacaaaatggatgacaggtcactgattacagaggtaaggaaatacctag |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2759439 |
atgatggcgcaattttgtcaggaaactgaagaccctcttccaaagaagttacacaaaatggatgacaggtcactgattacagaggtaaggaaatacctag |
2759538 |
T |
|
| Q |
312 |
aacataagaggtatttgatatt |
333 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2759539 |
aacataagaggtatttgatatt |
2759560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 2818589 - 2818903
Alignment:
| Q |
19 |
agaagaactatatggttggttattggagggtgtagccgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgccaagcta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
2818589 |
agaagaactatatggttggttattggagggtgcagccgagcgcacagtgatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagcta |
2818688 |
T |
|
| Q |
119 |
gtttttgacagccaaaaggtaacaacacagtttgattgtcaagcttgcattgtagtttctcaatcatacactgtgagaggattactgataaaaatgatgg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2818689 |
gtttttgacagccaaaaggtaacaacacagtttgattgtcgagcttgcatcgtagtttctcaatcatacactgtgagaggattactgataaaaatgatgg |
2818788 |
T |
|
| Q |
219 |
cgcaattttgtcaggaaactgaagaccctcttccaaagaagttacacaaaatggatgacaggtcactgattacagaggtaaggaaatacctagaacataa |
318 |
Q |
| |
|
|||||||| ||||||| ||||||||||| || | ||| |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2818789 |
agcaattttatcaggaagctgaagaccctgatctagagattttacgcaaaatggatgacaggttactgattatagaggtaaggaaatacctagaacataa |
2818888 |
T |
|
| Q |
319 |
gaggtatttgatatt |
333 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
2818889 |
gaggtatttaatatt |
2818903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 333
Target Start/End: Original strand, 2769094 - 2769415
Alignment:
| Q |
12 |
gcccaaaagaagaactatatggttggttattggagggtgtagccgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgc |
111 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
2769094 |
gcccaagagaagaattatttggttggttattggagggtgcagctaagcgcacagtgatatcagtggtaggaatggggggtctaggaaaaaccactcttgc |
2769193 |
T |
|
| Q |
112 |
caagctagtttttgacagccaaaaggtaacaacacagtttgattgtcaagcttgcattgtagtttctcaatcatacactgtgagaggattactgataaaa |
211 |
Q |
| |
|
||| ||||||| |||||||||||||||||| || | |||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2769194 |
caaactagtttatgacagccaaaaggtaactgcaaactttgattgtcgtgcttgcatcacagtttctcaatcatacactgtgagagggttactgataaaa |
2769293 |
T |
|
| Q |
212 |
atgatggcgcaattttgtcaggaaactgaagaccctcttccaaagaagttacacaaaatggatgacaggtcactgattacagaggtaaggaaatacctag |
311 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||| ||||||| | | ||||||||||||||||||| |
|
|
| T |
2769294 |
atgatggagcaattttgtcaggaaactgaagaacctctgctaaagatgttacacaaaatggatgacatgtcactggtaatagaggtaaggaaatacctac |
2769393 |
T |
|
| Q |
312 |
aacataagaggtatttgatatt |
333 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2769394 |
aacataagaggtatttgatatt |
2769415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 2807293 - 2807613
Alignment:
| Q |
13 |
cccaaaagaagaactatatggttggttattggagggtgtagccgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgcc |
112 |
Q |
| |
|
||||| ||||||| | | || ||||||||||||||||||||| || ||||| |||||||| |||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
2807293 |
cccaagagaagaaatgtctgtttggttattggagggtgtagctgagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgcc |
2807392 |
T |
|
| Q |
113 |
aagctagtttttgacagccaaaaggtaacaacacagtttgattgtcaagcttgcattgtagtttctcaatcatacactgtgagaggattactgataaaaa |
212 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| |||||||||| |||||||| | ||||||||||||||||||||||||||| || ||||||| | |
|
|
| T |
2807393 |
aagctagtttttgatagccaaacggtaacaacacactttgattgtcgtgcttgcatcgcagtttctcaatcatacactgtgagagggttgatgataaaca |
2807492 |
T |
|
| Q |
213 |
tgatggcgcaattttgtcaggaaactgaagaccctcttccaaagaagttacacaaaatggatgacaggtcactgattacagaggtaaggaaatacctaga |
312 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||| ||||||||| ||| || ||| ||||||| | |
|
|
| T |
2807493 |
tgatggagcaattttgtcaggaaactgaagaccctcttccaaataagttacgcaaattggatgacaaatcactgattgtagaagtgaggcaatacctgca |
2807592 |
T |
|
| Q |
313 |
acataagaggtatttgatatt |
333 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2807593 |
acataagaggtatttgatatt |
2807613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 2838713 - 2838392
Alignment:
| Q |
12 |
gcccaaaagaagaactatatggttggttattggagggtgtagccgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgc |
111 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||| ||| || |||||||| || ||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
2838713 |
gcccaagagaagaaatatatggttggttattggagggtgcagctgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgc |
2838614 |
T |
|
| Q |
112 |
caagctagtttttgacagccaaaaggtaacaacacagtttgattgtcaagcttgcattgtagtttctcaatcatacactgtgagaggattactgataaaa |
211 |
Q |
| |
|
||||||||||||||| ||||||||||||||| || | ||||||||| | |||||| | ||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
2838613 |
caagctagtttttgaaagccaaaaggtaacagcaaactttgattgttatgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaac |
2838514 |
T |
|
| Q |
212 |
atgatggcgcaattttgtcaggaaactgaagaccctcttccaaagaagttacacaaaatggatgacaggtcactgattacagaggtaaggaaatacctag |
311 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||||||||| ||| ||| ||||||| ||||||| |||||||||| ||| || ||| ||||||| |
|
|
| T |
2838513 |
atgatggagcaattttgtcggggaactgaagaccctcttccacagatgttgcacaaaaaggatgaccagtcactgattgaagaagtgaggcaatacctcc |
2838414 |
T |
|
| Q |
312 |
aacataagaggtatttgatatt |
333 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
2838413 |
aacataagaggtacttgatatt |
2838392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 5412913 - 5413232
Alignment:
| Q |
14 |
ccaaaagaagaactatatggttggttattggagggtgtagccgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgcca |
113 |
Q |
| |
|
|||||||||||| | | ||||||||||||||| |||| ||| ||||| ||||| || |||||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
5412913 |
ccaaaagaagaattgtctggttggttattggatggtgcagcggaacgtacagtcatatcagtggtaggaatggggggcctaggaaaaaccactcttgcca |
5413012 |
T |
|
| Q |
114 |
agctagtttttgacagccaaaaggtaacaacacagtttgattgtcaagcttgcattgtagtttctcaatcatacactgtgagaggattactgataaaaat |
213 |
Q |
| |
|
||||||||||||| |||||||||||| || |||| ||||||||| |||||| | ||||||||||||||||||||||||||| || ||||||| || |
|
|
| T |
5413013 |
agctagtttttgaaagccaaaaggtatcagcacactttgattgttgtgcttgcgtaacagtttctcaatcatacactgtgagaggtttgttgataaacat |
5413112 |
T |
|
| Q |
214 |
gatggcgcaattttgtcaggaaactgaagaccctcttccaaagaagttacacaaaatggatgacaggtcactgattacagaggtaaggaaatacctagaa |
313 |
Q |
| |
|
||||| ||||||||||| || |||||||||| ||||||| ||| ||||||||||||||||||| |||||||||||| ||| || ||| ||||||| || |
|
|
| T |
5413113 |
gatggagcaattttgtcggggaactgaagactctcttccgcagatgttacacaaaatggatgaccggtcactgattatagaagtgaggcaatacctgcaa |
5413212 |
T |
|
| Q |
314 |
cataagaggtatttgatatt |
333 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5413213 |
cataagaggtatttgatatt |
5413232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 2855923 - 2855602
Alignment:
| Q |
12 |
gcccaaaagaagaactatatggttggttattggagggtgtagccgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgc |
111 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||| ||| || | || |||| ||||||||||||||| |||||||||||| | || ||||| |||||||| |
|
|
| T |
2855923 |
gcccaaaagaagaattgtctggttggttattggaaggtatatctgagcgcaaagtgatttcagtggtgggaatggggggtataggaaaaactactcttgc |
2855824 |
T |
|
| Q |
112 |
caagctagtttttgacagccaaaaggtaacaacacagtttgattgtcaagcttgcattgtagtttctcaatcatacactgtgagaggattactgataaaa |
211 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | |||||||||| |||||||| ||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
2855823 |
caagctaatttttgacagccaaaaggtaacaacaaactttgattgtcgtgcttgcatcacagtttctcaatcatacactgtgagaggtttgttgataaac |
2855724 |
T |
|
| Q |
212 |
atgatggcgcaattttgtcaggaaactgaagaccctcttccaaagaagttacacaaaatggatgacaggtcactgattacagaggtaaggaaatacctag |
311 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||||||||| || ||| ||||||||||||||| ||||||||||| | | |||||| ||||||| |
|
|
| T |
2855723 |
atgatggagcaattttgtcggggaactgaagaccctcttccactgatgttgcacaaaatggatgaccagtcactgattatacaagtaaggcaatacctgc |
2855624 |
T |
|
| Q |
312 |
aacataagaggtatttgatatt |
333 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
2855623 |
aacataagaggtatttggtatt |
2855602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 2749021 - 2749341
Alignment:
| Q |
13 |
cccaaaagaagaactatatggttggttattggagggtgtagccgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgcc |
112 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| |||| ||| || ||||| ||||| || |||||||||||||| || || || ||||||||||||||| |
|
|
| T |
2749021 |
cccaaaagaagaactgtctggttggttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgcc |
2749120 |
T |
|
| Q |
113 |
aagctagtttttgacagccaaaaggtaacaacacagtttgattgtcaagcttgcattgtagtttctcaatcatacactgtgagaggattactgataaaaa |
212 |
Q |
| |
|
|||||||||||||| ||| |||||||| || |||| |||||||||| |||||| | |||||||||||| |||||||||||||| || ||||||| | |
|
|
| T |
2749121 |
aagctagtttttgaaagcaaaaaggtatcagcacactttgattgtcgtgcttgcgtcacagtttctcaatcttacactgtgagaggtttgttgataaaca |
2749220 |
T |
|
| Q |
213 |
tgatggcgcaattttgtcaggaaactgaagaccctcttccaaagaagttacacaaaatggatgacaggtcactgattacagaggtaaggaaatacctaga |
312 |
Q |
| |
|
|||||| |||||| |||| | ||| ||||| |||||| ||| ||||||||||||||||||| |||||| |||| ||| || ||| ||||||| | |
|
|
| T |
2749221 |
tgatggagcaattctgtcggagtactaaagactctcttctgcagatgttacacaaaatggatgaccagtcactaattatagaagtgaggcaatacctgca |
2749320 |
T |
|
| Q |
313 |
acataagaggtatttgatatt |
333 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2749321 |
acataagaggtatttgatatt |
2749341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 59 - 333
Target Start/End: Original strand, 2797433 - 2797707
Alignment:
| Q |
59 |
cgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgccaagctagtttttgacagccaaaaggtaacaacacagtttgattgtc |
158 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||| |
|
|
| T |
2797433 |
cgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagtcaaaaggtaacaacaaaatttgattgtc |
2797532 |
T |
|
| Q |
159 |
aagcttgcattgtagtttctcaatcatacactgtgagaggattactgataaaaatgatggcgcaattttgtcaggaaactgaagaccctcttccaaagaa |
258 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| || || |||| || ||||||| | |||||||| ||||||||| ||||||| ||| |
|
|
| T |
2797533 |
gtgcttgcatcacagtttctcaatcatacaccgtgagggggatattgatcaacatgatggaggaattttgtagcgaaactgaaagccctcttttgcagat |
2797632 |
T |
|
| Q |
259 |
gttacacaaaatggatgacaggtcactgattacagaggtaaggaaatacctagaacataagaggtatttgatatt |
333 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| | | || ||| ||||||| ||||||| | |||||||||||| |
|
|
| T |
2797633 |
gttacacaaaatggatgacaagtcattgattatacaagtgaggcaatacctgcaacataaaaagtatttgatatt |
2797707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 2790411 - 2790491
Alignment:
| Q |
31 |
tggttggttattggagggtgtagccgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgc |
111 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||||||||||||||| |||||||| ||||| || |||||||||||||| |
|
|
| T |
2790411 |
tggttggttattggagggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgc |
2790491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 333
Target Start/End: Original strand, 2790506 - 2790666
Alignment:
| Q |
173 |
gtttctcaatcatacactgtgagaggattactgataaaaatgatggcgcaattttgtcaggaaactgaagaccctcttccaaagaagttacacaaaatgg |
272 |
Q |
| |
|
||||||||||||| ||| ||||| || || |||| || ||||||| | |||||||| |||||||||| ||||||| ||| |||||||||||||| |
|
|
| T |
2790506 |
gtttctcaatcattcaccgtgagggggatattgatcaacatgatggaggaattttgtagcgaaactgaaggccctcttttgcagatgttacacaaaatgg |
2790605 |
T |
|
| Q |
273 |
atgacaggtcactgattacagaggtaaggaaatacctagaacataagaggtatttgatatt |
333 |
Q |
| |
|
|||||| |||||| ||| | | || ||| ||||||| ||||||| | |||||||||||| |
|
|
| T |
2790606 |
atgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaagtatttgatatt |
2790666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 6265 - 5944
Alignment:
| Q |
12 |
gcccaaaagaagaactatatggttggttattggagggtgtagccgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgc |
111 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||||||| || ||| || ||||| || |||||||||||||||||||| ||| | || |||||||||||||| |
|
|
| T |
6265 |
gcccaagagaggaattatatggttggttattggagagtccagctgagcgcaccgtaatttcagtggtaggaatgggaggtatagggaaaaccactcttgc |
6166 |
T |
|
| Q |
112 |
caagctagtttttgacagccaaaaggtaacaacacagtttgattgtcaagcttgcattgtagtttctcaatcatacactgtgagaggattactgataaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | |||||||||| ||||||| |||||||| ||||| ||||| |
|
|
| T |
6165 |
caagctagtttttgacagccaaaaggtaacaacacaatttgattgtcgtgcttgcatcgcagtttctcaaacatacaccgtgagagggttactcataaac |
6066 |
T |
|
| Q |
212 |
atgatggcgcaattttgtcaggaaactgaagaccctcttccaaagaagttacacaaaatggatgacaggtcactgattacagaggtaaggaaatacctag |
311 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||| | | |||||||||||||||||||| |||| | |||| ||| || ||| ||||||| |
|
|
| T |
6065 |
atgatggagcaattttgtcgggaaactgaagaccctcttccgcaaatgttacacaaaatggatgacaagtcattaattatagaagtgaggcaatacctgc |
5966 |
T |
|
| Q |
312 |
aacataagaggtatttgatatt |
333 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5965 |
aacataagaggtatttgatatt |
5944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University