View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20208_low_11 (Length: 323)
Name: NF20208_low_11
Description: NF20208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20208_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 5436007 - 5436186
Alignment:
| Q |
17 |
atgtacagtctaaaactcatcaaccaaccaagcaaccagaaaagtgaaccattaaaggaatcaactcaagtatattcaaattnnnnnnnnnnnnnnntat |
116 |
Q |
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| T |
5436007 |
atgtacagtctaaaactcatcaaccaaccaagcaaccagaaaagtgaaccattgaaggaatcaactcaagtatattcaaattaaaaaaaaa-------at |
5436099 |
T |
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| Q |
117 |
tccctctttcctttggacatagataggagaaacatcattgttagatacttgggatagattttgaccgaataaggtttttaagaagag |
203 |
Q |
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| T |
5436100 |
tccctctttcctttggacaaagataggagaaacatcatcgttagatacttgggatagattttgaccgaataaggtttttaagaagag |
5436186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 5428752 - 5428922
Alignment:
| Q |
26 |
ctaaaactcatcaaccaaccaagcaaccagaaaagtgaaccattaaaggaatcaactcaagtatattcaaattnnnnnnnnnnnnnnntattccctcttt |
125 |
Q |
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| T |
5428752 |
ctaaaactcatgaaccagccaagcaaccagaaaagagaaccattgaaggaatcagctcaaatatattcgaat-----ccaaaaacttttattcc--cttt |
5428844 |
T |
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| Q |
126 |
cctttggacatagataggagaaacatcattgttagatacttgggatagattttgaccgaataaggtttttaagaagag |
203 |
Q |
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| T |
5428845 |
ccttcggacaaagattggaggcacatcatccttagatacttgggatggattttgatcgaataaggtttttaagtagag |
5428922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 303
Target Start/End: Original strand, 5436251 - 5436286
Alignment:
| Q |
268 |
caatatccacttgaagagttcacgttgttggccttc |
303 |
Q |
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| T |
5436251 |
caatatccacttgaagagttcacgttgttggccttc |
5436286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 5428987 - 5429024
Alignment:
| Q |
268 |
caatatccacttgaagagttcacgttgttggccttctg |
305 |
Q |
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| T |
5428987 |
caatatccacttgaagagttcccgctgttggccttctg |
5429024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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