View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20208_low_14 (Length: 258)

Name: NF20208_low_14
Description: NF20208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20208_low_14
NF20208_low_14
[»] chr8 (9 HSPs)
chr8 (16-258)||(15750918-15751161)
chr8 (21-221)||(4506752-4506952)
chr8 (21-75)||(15169167-15169221)
chr8 (18-132)||(15047516-15047630)
chr8 (28-93)||(15066508-15066573)
chr8 (21-88)||(14999926-14999993)
chr8 (30-93)||(13033179-13033242)
chr8 (28-93)||(15214870-15214935)
chr8 (21-77)||(15164402-15164458)
[»] chr7 (2 HSPs)
chr7 (18-258)||(1618326-1618566)
chr7 (18-190)||(1626959-1627131)


Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 15750918 - 15751161
Alignment:
Q  16 aaaatctataatctcttttcaaaatcattttcaagccaaa-gatagtgatgttgttgttgccactatgccaaaatctggaacaacatggttgaaagccct 114  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  15750918 aaaatctataatctcttttcaaaatcattttcaagccaaaagatagtgatgttgttgttgcctctatgccaaaaactggaacaacatggttgaaagccct 15751017  T
Q  115 aacctttgctattgttaatcgtaatcgtttctcttctttagagaatcatccattacttacatctaattctcatgaacttgtgccttccttggaatcaaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15751018 aacctttgctattgttaatcgtaatcgtttctcttctttagagaatcatccattacttacatctaattctcatgaacttgtgccttccttggaatcaaat 15751117  T
Q  215 gtttatgttgataccatttctcagtttcctaaatttgatatatt 258  Q
    || ||||||||||||||||| ||||||||||| |||||||||||    
T  15751118 gtgtatgttgataccatttcccagtttcctaagtttgatatatt 15751161  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 4506952 - 4506752
Alignment:
Q  21 ctataatctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctggaacaacatggttgaaagccctaacctt 120  Q
    |||||| |||||||||||||||||||||||||||||| | |||| |||||||||| |   | |||||||| || ||||| ||||||||||| || || ||    
T  4506952 ctataaactcttttcaaaatcattttcaagccaaagacaatgatattgttgttgctagcttaccaaaatccggcacaacttggttgaaagcactcacatt 4506853  T
Q  121 tgctattgttaatcgtaatcgtttctcttctttagagaatcatccattacttacatctaattctcatgaacttgtgccttccttggaatcaaatgtttat 220  Q
    ||| |||||||||||| ||| ||||||||| |||||  ||||||||||||||| ||  ||||| |||||||| ||||||| ||| ||||  |||||||||    
T  4506852 tgccattgttaatcgtcatcatttctcttccttagaagatcatccattacttaaattcaattcacatgaactagtgcctttctttgaatacaatgtttat 4506753  T
Q  221 g 221  Q
    |    
T  4506752 g 4506752  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 15169221 - 15169167
Alignment:
Q  21 ctataatctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgc 75  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15169221 ctataatctcttttcaaaatcattttcaagccaaagatagtgatattgttgttgc 15169167  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 15047516 - 15047630
Alignment:
Q  18 aatctataatctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctggaacaacatggttgaaagccctaac 117  Q
    |||| |||| ||||||||||||| ||||| | |||||||| ||||||||| |  ||||| | ||||||||| | || || |||||||||||||||||  |    
T  15047516 aatccataaactcttttcaaaattattttaaggccaaagagagtgatgttttcattgcctccatgccaaaagcaggcaccacatggttgaaagcccttgc 15047615  T
Q  118 ctttgctattgttaa 132  Q
     ||||||||||||||    
T  15047616 atttgctattgttaa 15047630  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 15066508 - 15066573
Alignment:
Q  28 ctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctgg 93  Q
    ||||||||||||| ||||||| ||||||||||||||| |||| |||||  | ||||||||||||||    
T  15066508 ctcttttcaaaataattttcatgccaaagatagtgatattgtagttgcatccatgccaaaatctgg 15066573  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 14999926 - 14999993
Alignment:
Q  21 ctataatctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaa 88  Q
    |||||| |||||||| |||| |||||||| ||||||||||||||||| |||||||  | |||||||||    
T  14999926 ctataaactcttttcgaaataattttcaaaccaaagatagtgatgttattgttgcatccatgccaaaa 14999993  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 13033179 - 13033242
Alignment:
Q  30 cttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctgg 93  Q
    ||||||||||| | ||||| |||||||| | |||| ||||||||||  ||||||||||||||||    
T  13033179 cttttcaaaataaatttcatgccaaagacaatgatattgttgttgcatctatgccaaaatctgg 13033242  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 15214935 - 15214870
Alignment:
Q  28 ctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctgg 93  Q
    ||||||||||||| ||||||| || ||||| |||||| ||||||||||  | || |||||||||||    
T  15214935 ctcttttcaaaataattttcatgctaaagacagtgatattgttgttgcatccattccaaaatctgg 15214870  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 15164402 - 15164458
Alignment:
Q  21 ctataatctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgcca 77  Q
    |||||| |||| |||||||| |||||||||| ||||| | || ||||||||||||||    
T  15164402 ctataaactctgttcaaaatgattttcaagctaaagacaatgctgttgttgttgcca 15164458  T

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Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 1618566 - 1618326
Alignment:
Q  18 aatctataatctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctggaacaacatggttgaaagccctaac 117  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  1618566 aatctataatctcttttcaaaatgattttcaagctaaagatagtgatgttgttattgcctctatgccaaaatcaggaacaacatggttgaaagccctaac 1618467  T
Q  118 ctttgctattgttaatcgtaatcgtttctcttctttagagaatcatccattacttacatctaattctcatgaacttgtgccttccttggaatcaaatgtt 217  Q
    |||||| ||| |||||||  ||| ||| |||||  ||||||||||||||||||||| | ||||| |||||||| |  | |||| ||| ||||   || ||    
T  1618466 ctttgcaattattaatcgccatcatttttcttccctagagaatcatccattacttaaaactaatcctcatgaattaatacctttctttgaatttcatatt 1618367  T
Q  218 tatgttgataccatttctcagtttcctaaatttgatatatt 258  Q
    |||||||||||| ||| ||| ||||||||| ||||| ||||    
T  1618366 tatgttgataccgtttgtcaatttcctaaagttgatctatt 1618326  T

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Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 1627131 - 1626959
Alignment:
Q  18 aatctataatctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctggaacaacatggttgaaagccctaac 117  Q
    |||||||||||||||||||||| || |||||||| || ||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||    
T  1627131 aatctataatctcttttcaaaaccactttcaagctaaggatagtgatgtggttgttgccactgttccaaaatcaggaacaacatggttgaaagccctaac 1627032  T
Q  118 ctttgctattgttaatcgtaatcgtttctcttctttagagaatcatccattacttacatctaattctcatgaa 190  Q
    |||||| ||| |||||||  ||| ||||||||||||| | ||||||||||| |||||||||||| ||||||||    
T  1627031 ctttgccattattaatcgccatcatttctcttctttacataatcatccattgcttacatctaatcctcatgaa 1626959  T

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