View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20208_low_15 (Length: 227)

Name: NF20208_low_15

Description: NF20208

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20208_low_15

[»] chr4 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 186; E-Value: 1e-101

Query Start/End: Original strand, 21 - 214

Target Start/End: Original strand, 26846472 - 26846665

Alignment:

Q	21	atccaaaaatatggtcatatttgtttaatgtttaaaataaaagaccgagcaatataggaaataacatttttattgcaggagaggcgtgcatatctatttt	120	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26846472	atccaaaaatatggtcatatttgtttaatgtttaaaataaaagactgagcaatataggaaataacatttttattgcaggagaggcgtgcatatctatttt	26846571	T

Q	121	gcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatgaaatcaacaaacttaccaagcaacacagcaggtttcttctcac	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26846572	gcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatgaaatcaacaaacttaccaagcaacacaacaggtttcttctcac	26846665	T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 45; E-Value: 9e-17

Query Start/End: Original strand, 87 - 171

Target Start/End: Original strand, 54881118 - 54881202

Alignment:

Q	87	tttttattgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatg	171	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|
T	54881118	tttttgttgcaggagaggcgtggatatctattttgccaagaagatagagcgattctatgcagagaatgtgaccttccaatccatg	54881202	T

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