View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20208_low_16 (Length: 205)
Name: NF20208_low_16
Description: NF20208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20208_low_16 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 2749344 - 2749170
Alignment:
| Q |
13 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2749344 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttag |
2749245 |
T |
|
| Q |
113 |
tactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaag |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2749244 |
tactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaag |
2749170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 5413235 - 5413061
Alignment:
| Q |
13 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
5413235 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataatcagtgaccggtcatccattttgtgtaacatctgcggaagagagtcttcag |
5413136 |
T |
|
| Q |
113 |
tactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaag |
187 |
Q |
| |
|
| | |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
5413135 |
ttccccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgttacgcaag |
5413061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 2838389 - 2838563
Alignment:
| Q |
13 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttag |
112 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||| |||||| ||||| || |
|
|
| T |
2838389 |
aagaatatcaagtacctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcag |
2838488 |
T |
|
| Q |
113 |
tactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaag |
187 |
Q |
| |
|
| | |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2838489 |
ttccccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaag |
2838563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 2855599 - 2855773
Alignment:
| Q |
13 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttag |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||| |||||| | |||||| ||||| || |
|
|
| T |
2855599 |
aagaataccaaatacctcttatgttgcaggtattgccttacttgtataatcagtgactggtcatccattttgtgcaacatcagtggaagagggtcttcag |
2855698 |
T |
|
| Q |
113 |
tactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaag |
187 |
Q |
| |
|
| | |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
2855699 |
ttccccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgatgcaag |
2855773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 2807616 - 2807442
Alignment:
| Q |
13 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||| |||| ||||| | | |||||| ||||| || |
|
|
| T |
2807616 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcag |
2807517 |
T |
|
| Q |
113 |
tactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaag |
187 |
Q |
| |
|
| | |||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
2807516 |
tttcctgacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaag |
2807442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 2769418 - 2769244
Alignment:
| Q |
13 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttag |
112 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||| || ||||| | |||||| ||||||||||||||||||||||| || |||| |||| || |
|
|
| T |
2769418 |
aagaatatcaaatacctcttatgttgtaggtatttccttacctctattaccagtgacatgtcatccattttgtgtaacatctttagcagaggttcttcag |
2769319 |
T |
|
| Q |
113 |
tactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaag |
187 |
Q |
| |
|
| | |||| |||||||||||||| ||||||| || |||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
2769318 |
tttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaag |
2769244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 2797710 - 2797536
Alignment:
| Q |
13 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttag |
112 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||||||||||||| ||||| | || || |
|
|
| T |
2797710 |
aagaatatcaaatactttttatgttgcaggtattgcctcacttgtataatcaatgacttgtcatccattttgtgtaacatctgcaaaagagggctttcag |
2797611 |
T |
|
| Q |
113 |
tactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaag |
187 |
Q |
| |
|
| | ||| |||| |||||||||||| ||||| | || ||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
2797610 |
tttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgtatgattgagaaactgtgatgcaag |
2797536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 2790672 - 2790495
Alignment:
| Q |
10 |
tcgaagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctt |
109 |
Q |
| |
|
|||||||||||||||||| | ||||||| ||||||||||||||||| || ||| ||||||| |||||||||||||||||||||||||| ||||| | ||| |
|
|
| T |
2790672 |
tcgaagaatatcaaatactttttatgtttcaggtattgcctcacttgtagaatgagtgacttgtcatccattttgtgtaacatctgcaaaagagggcctt |
2790573 |
T |
|
| Q |
110 |
tagtactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaag |
187 |
Q |
| |
|
||| | ||| |||| |||||||||||| ||||| | || ||||| ||| | ||||||||||| |||| ||||| |
|
|
| T |
2790572 |
cagtttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgaatgattgagaaacggtgatgcaag |
2790495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 2759563 - 2759399
Alignment:
| Q |
13 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttag |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||| || ||| |||| |||||| ||||||||||||||||||| ||| |||||| ||||| || |
|
|
| T |
2759563 |
aagaatatcaaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcag |
2759464 |
T |
|
| Q |
113 |
tactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaact |
177 |
Q |
| |
|
| | |||| |||||| ||||||| ||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
2759463 |
tttcctgacaaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaact |
2759399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 2818906 - 2818742
Alignment:
| Q |
13 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttag |
112 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||| ||| || |||||||| ||| || ||||||||||||| |||| |||| ||| || ||||| || |
|
|
| T |
2818906 |
aagaatattaaatacctcttatgttctaggtatttccttacctctataatcagtaacctgtcatccattttgcgtaaaatctctagatcagggtcttcag |
2818807 |
T |
|
| Q |
113 |
tactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaact |
177 |
Q |
| |
|
| || | |||||||||||||| ||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
2818806 |
cttcctgataaaattgctccatcatttttatcagtaatcctctcacagtgtatgattgagaaact |
2818742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 5941 - 6115
Alignment:
| Q |
13 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| |||||| ||||| || |
|
|
| T |
5941 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcag |
6040 |
T |
|
| Q |
113 |
tactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaag |
187 |
Q |
| |
|
| |||||| |||||||||||||||||||| | || |||||||| ||||| | ||||||||||| || ||||| |
|
|
| T |
6041 |
tttcccgacaaaattgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaag |
6115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University