View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20208_low_4 (Length: 547)

Name: NF20208_low_4
Description: NF20208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20208_low_4
NF20208_low_4
[»] chr2 (30 HSPs)
chr2 (1-196)||(37320495-37320690)
chr2 (334-383)||(37320829-37320878)
chr2 (7-69)||(10065488-10065550)
chr2 (7-85)||(30243249-30243327)
chr2 (1-69)||(24548026-24548094)
chr2 (7-69)||(24593391-24593453)
chr2 (7-69)||(28771597-28771659)
chr2 (39-83)||(18688928-18688972)
chr2 (45-84)||(39088821-39088860)
chr2 (40-83)||(40797365-40797408)
chr2 (27-85)||(13196699-13196757)
chr2 (7-69)||(20120705-20120767)
chr2 (25-74)||(5137807-5137856)
chr2 (7-60)||(9516993-9517046)
chr2 (24-69)||(12124560-12124605)
chr2 (7-84)||(18324878-18324955)
chr2 (35-84)||(30045453-30045502)
chr2 (35-84)||(30050616-30050665)
chr2 (24-85)||(30089048-30089109)
chr2 (24-85)||(30125652-30125713)
chr2 (35-84)||(30141660-30141709)
chr2 (7-68)||(31048300-31048361)
chr2 (24-85)||(44694687-44694748)
chr2 (38-90)||(1238156-1238208)
chr2 (24-84)||(10058871-10058931)
chr2 (26-66)||(12994492-12994532)
chr2 (33-85)||(13922642-13922694)
chr2 (5-85)||(21497666-21497746)
chr2 (38-82)||(22359007-22359051)
chr2 (25-85)||(35727436-35727496)
[»] chr3 (25 HSPs)
chr3 (14-85)||(28595788-28595858)
chr3 (8-91)||(23525106-23525189)
chr3 (7-85)||(4216384-4216461)
chr3 (7-85)||(47377333-47377411)
chr3 (29-90)||(2078234-2078295)
chr3 (24-85)||(43352713-43352774)
chr3 (24-69)||(52119391-52119436)
chr3 (26-85)||(17588361-17588420)
chr3 (26-85)||(22486682-22486741)
chr3 (7-69)||(1149053-1149115)
chr3 (7-85)||(8127462-8127540)
chr3 (26-88)||(38869521-38869583)
chr3 (27-69)||(39822176-39822218)
chr3 (15-69)||(53681869-53681923)
chr3 (41-82)||(9251415-9251456)
chr3 (24-85)||(10922309-10922370)
chr3 (24-84)||(52454978-52455039)
chr3 (24-69)||(54230100-54230145)
chr3 (25-85)||(1743992-1744052)
chr3 (7-63)||(5702163-5702218)
chr3 (26-94)||(8113565-8113633)
chr3 (29-69)||(10926484-10926524)
chr3 (40-84)||(24145398-24145442)
chr3 (26-78)||(39869810-39869862)
chr3 (45-85)||(41442948-41442988)
[»] chr8 (19 HSPs)
chr8 (7-85)||(16843507-16843585)
chr8 (7-85)||(1244689-1244767)
chr8 (26-79)||(7679907-7679960)
chr8 (29-69)||(5179808-5179848)
chr8 (24-84)||(23159441-23159501)
chr8 (40-91)||(42700498-42700549)
chr8 (25-87)||(14279573-14279635)
chr8 (7-69)||(19778080-19778142)
chr8 (40-85)||(8837919-8837964)
chr8 (24-85)||(10732776-10732837)
chr8 (24-61)||(32192917-32192954)
chr8 (24-61)||(33620921-33620958)
chr8 (25-69)||(444139-444182)
chr8 (24-60)||(8072752-8072788)
chr8 (24-60)||(11104788-11104824)
chr8 (29-85)||(12249491-12249547)
chr8 (29-69)||(35700401-35700441)
chr8 (7-79)||(40167327-40167399)
chr8 (35-79)||(42982890-42982934)
[»] chr5 (33 HSPs)
chr5 (26-85)||(14124300-14124359)
chr5 (41-85)||(29667889-29667933)
chr5 (7-79)||(43108574-43108646)
chr5 (26-85)||(11647196-11647255)
chr5 (26-69)||(16752505-16752548)
chr5 (25-84)||(29560892-29560951)
chr5 (14-79)||(18981180-18981245)
chr5 (6-91)||(23118034-23118119)
chr5 (14-79)||(31159434-31159499)
chr5 (5-94)||(37932320-37932409)
chr5 (29-81)||(5246162-5246214)
chr5 (25-85)||(20175826-20175886)
chr5 (7-91)||(30971071-30971155)
chr5 (7-87)||(35109397-35109477)
chr5 (7-70)||(2053040-2053103)
chr5 (26-61)||(6237722-6237757)
chr5 (31-78)||(34206233-34206280)
chr5 (26-65)||(37339763-37339802)
chr5 (24-78)||(4763187-4763241)
chr5 (24-82)||(6424904-6424962)
chr5 (24-85)||(9628115-9628177)
chr5 (26-92)||(11844441-11844507)
chr5 (7-69)||(27679513-27679575)
chr5 (7-69)||(28604402-28604464)
chr5 (7-85)||(34702489-34702567)
chr5 (7-84)||(9123829-9123906)
chr5 (24-85)||(11637573-11637634)
chr5 (45-82)||(13914465-13914502)
chr5 (40-85)||(39914900-39914945)
chr5 (40-92)||(2637885-2637937)
chr5 (26-70)||(3955560-3955604)
chr5 (25-93)||(8544991-8545059)
chr5 (29-69)||(14681260-14681300)
[»] chr7 (19 HSPs)
chr7 (24-85)||(2391006-2391067)
chr7 (7-79)||(32896448-32896520)
chr7 (8-87)||(7872733-7872812)
chr7 (23-85)||(8879747-8879809)
chr7 (7-85)||(20103438-20103516)
chr7 (44-78)||(36731147-36731181)
chr7 (24-85)||(27263340-27263401)
chr7 (24-85)||(27270234-27270295)
chr7 (7-84)||(47343189-47343266)
chr7 (26-78)||(45425459-45425511)
chr7 (13-69)||(46987101-46987157)
chr7 (30-85)||(2962733-2962788)
chr7 (30-85)||(41860265-41860320)
chr7 (34-88)||(24071450-24071504)
chr7 (7-93)||(32315214-32315300)
chr7 (7-81)||(48837870-48837944)
chr7 (25-69)||(24991796-24991840)
chr7 (29-65)||(25246790-25246826)
chr7 (45-85)||(35666302-35666342)
[»] chr6 (10 HSPs)
chr6 (24-60)||(2445323-2445359)
chr6 (7-70)||(9923254-9923317)
chr6 (26-85)||(14679124-14679183)
chr6 (24-85)||(8629697-8629758)
chr6 (7-81)||(2726401-2726475)
chr6 (40-85)||(2213296-2213341)
chr6 (24-85)||(8381195-8381256)
chr6 (40-85)||(23629854-23629899)
chr6 (13-85)||(6470606-6470678)
chr6 (37-69)||(26522487-26522519)
[»] chr4 (26 HSPs)
chr4 (17-93)||(7922245-7922320)
chr4 (7-61)||(19854588-19854642)
chr4 (26-84)||(20131427-20131485)
chr4 (13-83)||(46409471-46409541)
chr4 (24-85)||(41346755-41346815)
chr4 (13-85)||(24488421-24488493)
chr4 (24-60)||(28568229-28568265)
chr4 (24-95)||(10303512-10303583)
chr4 (7-62)||(34833990-34834045)
chr4 (24-79)||(34960158-34960213)
chr4 (44-90)||(17134119-17134165)
chr4 (7-61)||(29808252-29808306)
chr4 (24-78)||(43354239-43354293)
chr4 (24-69)||(12671749-12671794)
chr4 (24-69)||(15988432-15988477)
chr4 (24-85)||(23225864-23225925)
chr4 (24-69)||(24785463-24785508)
chr4 (24-69)||(24822758-24822803)
chr4 (24-93)||(48317725-48317794)
chr4 (24-69)||(49473660-49473705)
chr4 (25-85)||(6520070-6520130)
chr4 (7-83)||(11144649-11144725)
chr4 (37-85)||(12712032-12712080)
chr4 (37-85)||(13304110-13304158)
chr4 (24-84)||(19908692-19908752)
chr4 (25-69)||(36071159-36071203)
[»] scaffold0126 (1 HSPs)
scaffold0126 (25-92)||(34890-34957)
[»] chr1 (27 HSPs)
chr1 (7-85)||(9639801-9639879)
chr1 (7-69)||(10132428-10132490)
chr1 (7-69)||(17283966-17284028)
chr1 (7-85)||(35473951-35474029)
chr1 (24-85)||(23221221-23221282)
chr1 (7-83)||(47417784-47417860)
chr1 (7-61)||(18306022-18306077)
chr1 (46-85)||(18521246-18521285)
chr1 (7-58)||(26256073-26256124)
chr1 (14-69)||(34429827-34429882)
chr1 (7-62)||(44221009-44221064)
chr1 (26-97)||(47719110-47719181)
chr1 (7-69)||(8210369-8210431)
chr1 (7-85)||(21638112-21638190)
chr1 (38-84)||(45224294-45224340)
chr1 (24-69)||(7616827-7616872)
chr1 (7-60)||(25942636-25942689)
chr1 (24-85)||(27853354-27853415)
chr1 (7-84)||(50466307-50466384)
chr1 (16-97)||(50849066-50849147)
chr1 (29-85)||(1091178-1091234)
chr1 (1-93)||(19262885-19262977)
chr1 (13-69)||(38448856-38448912)
chr1 (7-79)||(41973260-41973332)
chr1 (25-69)||(45481508-45481552)
chr1 (29-69)||(48898498-48898538)
chr1 (24-60)||(52853031-52853067)
[»] scaffold0533 (1 HSPs)
scaffold0533 (25-85)||(8852-8913)
[»] scaffold0238 (1 HSPs)
scaffold0238 (7-85)||(25388-25466)
[»] scaffold0012 (1 HSPs)
scaffold0012 (35-79)||(119966-120010)
[»] scaffold0006 (1 HSPs)
scaffold0006 (35-79)||(210090-210134)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 37320495 - 37320690
Alignment:
Q  1 tttatctttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaacaaactaatgg 100  Q
    ||||||||||| ||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||  |||||||| ||||||| ||||||||||||    
T  37320495 tttatctttttggtggtgtccatggttcgaacctcgaaccttgcatatattatgcattgtctttaccaactgagttaagctcacgtggacaaactaatgg 37320594  T
Q  101 tttatctttagatgtaatataacatcgcttaaattatatatgtaatctgctgcaaataattcagtaatttaaagaaaaaaagcaacaaaataattc 196  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37320595 tttatctttatatgtaatataacatcgcttaaattatatatgtaatctgctgcaaataattcaataatttaaagaaaaaaagcaacaaaataattc 37320690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 383
Target Start/End: Original strand, 37320829 - 37320878
Alignment:
Q  334 tttatagagtcttcttaaggatgggataaagactcgaataggatataata 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37320829 tttatagagtcttcttaaggatgggataaagactcgaataggatataata 37320878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 10065550 - 10065488
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||| |||||||||| ||||||||||| ||| |||| ||||||||||||||||| |||||||    
T  10065550 ttttttgtggtgtccagggttcgaaccctgaaacttgcatatattatgcattgtccttaccaa 10065488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 30243327 - 30243249
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||| |||||| ||  |||| |||||||||| ||||||||||||||||||||||| ||||||  ||| ||||||||||    
T  30243327 tttttggtggtggccgaggtttgaaccccgaaccttgtatatattatgcattgtctctaccaactgagctaagttcacg 30243249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 24548094 - 24548026
Alignment:
Q  1 tttatctttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||| ||||| |||||||||| ||||||||||||| | |||| |||||||||| |||||| |||||||    
T  24548094 tttatttttttggtggtgtccagggttcgaaccccggaccttgaatatattatggattgtccttaccaa 24548026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 24593453 - 24593391
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||| ||||||| || ||||||||||||| | |||| ||||||||||||||||| |||||||    
T  24593453 tttttggtggtgttcagggttcgaaccccggaccttgcatatattatgcattgtccttaccaa 24593391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 28771659 - 28771597
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||| |||||||||  |||||||||| || |||||| ||||||||||||||||| |||||||    
T  28771659 tttttggtggtgtccggggttcgaaccgcggatcttgcatatattatgcattgtccttaccaa 28771597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 18688928 - 18688972
Alignment:
Q  39 tcttgtatatattatgcattgtctttaccaatcgagttaagttca 83  Q
    |||||||| ||||||| ||||||||||||||| ||||||||||||    
T  18688928 tcttgtatgtattatgtattgtctttaccaattgagttaagttca 18688972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 39088821 - 39088860
Alignment:
Q  45 atatattatgcattgtctttaccaatcgagttaagttcac 84  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  39088821 atatattatgcattgtctttaccaactgagttaagttcac 39088860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 40797408 - 40797365
Alignment:
Q  40 cttgtatatattatgcattgtctttaccaatcgagttaagttca 83  Q
    |||||||||||||||||||||| ||||||||  |||||||||||    
T  40797408 cttgtatatattatgcattgtccttaccaattaagttaagttca 40797365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 13196757 - 13196699
Alignment:
Q  27 tcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||||||||||| |||| ||||||||||||||||   ||||||  ||||||||||||||    
T  13196757 tcgaaccccgaaccttgcatatattatgcattgttcataccaactgagttaagttcacg 13196699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 20120705 - 20120767
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||| |||||||||  | || |||||||||| |||| ||||||||||||||||| |||||||    
T  20120705 ttttttgtggtgtccgggatttgaaccccgaaccttgcatatattatgcattgtccttaccaa 20120767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 5137807 - 5137856
Alignment:
Q  25 gttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgag 74  Q
    |||||||||||| | |||| ||||||||| ||||||| ||||||||||||    
T  5137807 gttcgaaccccggaccttgcatatattatacattgtccttaccaatcgag 5137856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 9516993 - 9517046
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgt 60  Q
    ||||| |||||| ||  |||||||| |||| |||||||||||||||||||||||    
T  9516993 tttttggtggtggccgaggttcgaaacccggatcttgtatatattatgcattgt 9517046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 12124605 - 12124560
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||||||||||| | |||| ||||||||||||||||| |||||||    
T  12124605 ggttcgaaccccggaccttgcatatattatgcattgtccttaccaa 12124560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 18324878 - 18324955
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcac 84  Q
    ||||| ||||||| || |||||||| ||   |||||| ||||||||||||||||| |||||||  |||||||| ||||    
T  18324878 ttttttgtggtgttcagggttcgaatcctagatcttgcatatattatgcattgtccttaccaactgagttaagctcac 18324955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 30045502 - 30045453
Alignment:
Q  35 cgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcac 84  Q
    |||| ||||||||||||||||||||||  ||||||| ||| |||||||||    
T  30045502 cgaaccttgtatatattatgcattgtccctaccaattgagctaagttcac 30045453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 30050665 - 30050616
Alignment:
Q  35 cgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcac 84  Q
    |||| ||||||||||||||||||||||  ||||||| ||| |||||||||    
T  30050665 cgaaccttgtatatattatgcattgtccctaccaattgagctaagttcac 30050616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 30089109 - 30089048
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||| |||||||| | ||||||||||||||||||||||  ||||||  ||| ||||||||||    
T  30089109 ggtttgaaccccggaccttgtatatattatgcattgtccctaccaactgagctaagttcacg 30089048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 30125713 - 30125652
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||| |||||||| | ||||||||||||||||||||||  ||||||  ||| ||||||||||    
T  30125713 ggtttgaaccccggaccttgtatatattatgcattgtccctaccaactgagctaagttcacg 30125652  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 30141709 - 30141660
Alignment:
Q  35 cgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcac 84  Q
    |||| ||||||||||||||||||||||  ||||||| ||| |||||||||    
T  30141709 cgaaccttgtatatattatgcattgtccctaccaattgagctaagttcac 30141660  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 31048300 - 31048361
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttacca 68  Q
    ||||| |||||||||  |||||||| | |||| |||| ||||| ||||||||||||||||||    
T  31048300 tttttggtggtgtccggggttcgaatctcgaaccttgcatataatatgcattgtctttacca 31048361  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 44694748 - 44694687
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||| |||||||||  |||| |||||||||||||||||| || |||  ||||||||||||||    
T  44694748 ggtttgaaccccgagccttgcatatattatgcattgtctatatcaactgagttaagttcacg 44694687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 1238208 - 1238156
Alignment:
Q  38 atcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaac 90  Q
    ||||||||||||||||||||||||  || |||| |||||||| ||||| ||||    
T  1238208 atcttgtatatattatgcattgtccctatcaattgagttaagctcacgagaac 1238156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 10058931 - 10058871
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcac 84  Q
    ||||| ||||||||   ||| |||||||||||||||||| ||||||| |||||||| ||||    
T  10058931 ggttcaaaccccgacctttgcatatattatgcattgtctctaccaattgagttaagctcac 10058871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 12994492 - 12994532
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtctttac 66  Q
    ||||||||| |||||||| ||||||||| ||||||||||||    
T  12994492 ttcgaaccctgaatcttgcatatattatacattgtctttac 12994532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 13922642 - 13922694
Alignment:
Q  33 cccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||| |||||||||||||||||||||  ||||||  |||||||| |||||    
T  13922642 cccgaattttgtatatattatgcattgtccctaccaactgagttaagctcacg 13922694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 21497746 - 21497666
Alignment:
Q  5 tctttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||| |||||| ||  ||||  |||| |||| |||| ||||||||||||||||  ||||||| ||||||||| |||||    
T  21497746 tcttttttgtggtggccgaggtttaaacctcgaaccttgcatatattatgcattgttcttaccaaccgagttaagctcacg 21497666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 22359051 - 22359007
Alignment:
Q  38 atcttgtatatattatgcattgtctttaccaatcgagttaagttc 82  Q
    |||||| ||||||||||||||||| |||||||  |||||||||||    
T  22359051 atcttgcatatattatgcattgtccttaccaactgagttaagttc 22359007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 35727496 - 35727436
Alignment:
Q  25 gttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||||| || |||| ||||||||||||||||  |||||||  |||||||| |||||    
T  35727496 gttcgaaccccaaaccttgcatatattatgcattgttcttaccaactgagttaagctcacg 35727436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 28595858 - 28595788
Alignment:
Q  14 tggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||||||||||||||| |||  |||||||||||||||||||||||||||||| ||||||||||||||    
T  28595858 tggtgtccatggttcgaaccc-gaactttgtatatattatgcattgtctttaccaattgagttaagttcacg 28595788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 23525106 - 23525189
Alignment:
Q  8 ttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaaca 91  Q
    |||| |||||||||||||||| || || |||| ||| ||||||||||||||||| || ||||  |||||||| ||||| |||||    
T  23525106 tttttgtggtgtccatggttcaaatcctgaattttgcatatattatgcattgtccttgccaactgagttaagctcacgggaaca 23525189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 4216384 - 4216461
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||| |||||||||| ||||||||||||| | |||| ||||||||||||||||| ||| |||  ||| ||||||||||    
T  4216384 tttttggtggtgtccagggttcgaaccccg-accttgcatatattatgcattgtccttatcaactgagctaagttcacg 4216461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 47377333 - 47377411
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||| |||||| |||  ||| ||||| |||| |||||||||||||||||||||| |||||||  |||||||| |||||    
T  47377333 ttttttgtggtggccaatgtttgaacctcgaaccttgtatatattatgcattgtccttaccaactgagttaagctcacg 47377411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 2078295 - 2078234
Alignment:
Q  29 gaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaac 90  Q
    ||||||| || |||| |||||||||||||||||| ||||||  |||||||||||||| ||||    
T  2078295 gaaccccaaaccttgcatatattatgcattgtctctaccaactgagttaagttcacgagaac 2078234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 43352774 - 43352713
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||||||| | |||||||||| |||| ||| |||||| ||| |||||||||||||||    
T  43352774 ggttcgaaccccggaccttgtatataatatgtattatctttatcaaccgagttaagttcacg 43352713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 52119436 - 52119391
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||||    
T  52119436 ggttcgaaccccgaaccttgcatatattatgcattgtccttaccaa 52119391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 17588420 - 17588361
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||||  |||||| ||||||||||||||||| |||||||  |||||||| |||||    
T  17588420 ttcgaaccccagatcttgcatatattatgcattgtccttaccaactgagttaagctcacg 17588361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 22486741 - 22486682
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||||||||| ||||||| ||||||||||||||||  |||||||  |||||||| |||||    
T  22486741 ttcgaaccccaaatcttgcatatattatgcattgttcttaccaactgagttaagctcacg 22486682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 1149053 - 1149115
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||| |||||||||| |||||||||||   | |||| ||||||||||||||||| |||||||    
T  1149053 ttttttgtggtgtccagggttcgaaccctagaccttgcatatattatgcattgtccttaccaa 1149115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 8127540 - 8127462
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||| ||||||  ||||||| ||||||| || |||| |||| |||||||||||| |||||||  |||||||| |||||    
T  8127540 ttttttgtggtggtcatggtttgaaccccaaaccttgcatattttatgcattgtccttaccaactgagttaagctcacg 8127462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 38869521 - 38869583
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtga 88  Q
    |||||||| || |||||||||||||||||||||||  |||||||  ||| |||||||| ||||    
T  38869521 ttcgaacctcggatcttgtatatattatgcattgttcttaccaactgagctaagttcatgtga 38869583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 39822176 - 39822218
Alignment:
Q  27 tcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    |||||||||| | |||||||||||||||||||||| |||||||    
T  39822176 tcgaaccccggaccttgtatatattatgcattgtccttaccaa 39822218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 53681869 - 53681923
Alignment:
Q  15 ggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    |||||||| |||||||||| | ||||||| ||||||||||||||||  |||||||    
T  53681869 ggtgtccagggttcgaacctcaaatcttgcatatattatgcattgttcttaccaa 53681923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 9251415 - 9251456
Alignment:
Q  41 ttgtatatattatgcattgtctttaccaatcgagttaagttc 82  Q
    |||||||||||||||||||||  ||||||| |||||||||||    
T  9251415 ttgtatatattatgcattgtccctaccaattgagttaagttc 9251456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 10922309 - 10922370
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||| |||||||| |||||| |||||||||||||||||  ||||||  |||||||| |||||    
T  10922309 ggtttgaaccccggatcttgcatatattatgcattgtccctaccaactgagttaagctcacg 10922370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 52454978 - 52455039
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtct-ttaccaatcgagttaagttcac 84  Q
    |||| |||||||||| ||||||||||||||||||| | | |||||||| ||| |||||||||    
T  52454978 ggtttgaaccccgaaccttgtatatattatgcattttttcttaccaattgagctaagttcac 52455039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 54230100 - 54230145
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    |||||||||||| || |||| ||||||||||||||||| |||||||    
T  54230100 ggttcgaaccccaaaccttgcatatattatgcattgtccttaccaa 54230145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 1743992 - 1744052
Alignment:
Q  25 gttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||||||||||||| |||| |||||||||| ||||||  ||||||  || |||||||||||    
T  1743992 gttcgaaccccgaaccttgcatatattatgtattgtccataccaactgaattaagttcacg 1744052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 5702163 - 5702218
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctt 63  Q
    ||||| |||||||||| |||||||||| | || |||| |||||||||||||||||||    
T  5702163 ttttttgtggtgtcca-ggttcgaacctcaaaccttgcatatattatgcattgtctt 5702218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 8113565 - 8113633
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaacaaac 94  Q
    |||||||| || |||||| ||||||||||||||||| |||||||  ||| |||| |||||  |||||||    
T  8113565 ttcgaaccgcggatcttgcatatattatgcattgtccttaccaactgagctaagctcacggaaacaaac 8113633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 10926524 - 10926484
Alignment:
Q  29 gaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    |||||||||| |||| ||||||||||||||||| |||||||    
T  10926524 gaaccccgaaccttgcatatattatgcattgtccttaccaa 10926484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 24145442 - 24145398
Alignment:
Q  40 cttgtatatattatgcattgtctttaccaatcgagttaagttcac 84  Q
    ||||||||||||||||||||||  ||||||  |||||||||||||    
T  24145442 cttgtatatattatgcattgtccctaccaactgagttaagttcac 24145398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 39869810 - 39869862
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaa 78  Q
    |||||||| || | |||||||||||||||||||||| |||||||  |||||||    
T  39869810 ttcgaacctcggaccttgtatatattatgcattgtccttaccaactgagttaa 39869862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 41442948 - 41442988
Alignment:
Q  45 atatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||||| |||||||||| |||||||| ||||||||||||||    
T  41442948 atatataatgcattgtccttaccaattgagttaagttcacg 41442988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 16843507 - 16843585
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||| |||||||||| |||||||||| |||| |||| ||||||||| ||||||| ||| ||||||||||||| |||||    
T  16843507 ttttttgtggtgtccagggttcgaaccacgaaccttgcatatattatacattgtccttatcaatcgagttaagctcacg 16843585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 1244689 - 1244767
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||| |||||||||  ||||||||||||  | |||||||||||||||||||||| |||||||  ||| ||||||||||    
T  1244689 ttttttgtggtgtccggggttcgaaccccagaccttgtatatattatgcattgtccttaccaactgagctaagttcacg 1244767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 7679960 - 7679907
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaag 79  Q
    ||||||||||||| |||| |||||||||||||||||||| ||||  ||||||||    
T  7679960 ttcgaaccccgaaccttgcatatattatgcattgtctttgccaactgagttaag 7679907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 5179848 - 5179808
Alignment:
Q  29 gaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  5179848 gaaccccgaaccttgtatatattatgcattgtccttaccaa 5179808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 23159501 - 23159441
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcac 84  Q
    |||| ||||||||||||||| |||||||||||||||||  ||  ||| |||||||||||||    
T  23159501 ggtttgaaccccgaatcttgcatatattatgcattgtccatatgaattgagttaagttcac 23159441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 42700549 - 42700498
Alignment:
Q  40 cttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaaca 91  Q
    |||| |||||||||||||||||| |||||| ||||||||| ||||| |||||    
T  42700549 cttgcatatattatgcattgtctctaccaaccgagttaagctcacgagaaca 42700498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 14279573 - 14279635
Alignment:
Q  25 gttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtg 87  Q
    |||||||||||||| |||| |||| ||||||||||||| ||||||  |||||||  |||||||    
T  14279573 gttcgaaccccgaaccttgcatattttatgcattgtctataccaactgagttaaactcacgtg 14279635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 19778142 - 19778080
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||| |||||||| | | ||||||||||| | |||| ||||||||||||||||| |||||||    
T  19778142 tttttggtggtgtctaggattcgaaccccggaccttgcatatattatgcattgtccttaccaa 19778080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 8837964 - 8837919
Alignment:
Q  40 cttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||||||||||||||||  || ||| |||||||||||||||    
T  8837964 cttgtatatattatgcattgtccctatcaaccgagttaagttcacg 8837919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 10732776 - 10732837
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||||  ||| |||||||||||||||||||||   ||||||| |||||||| |||||    
T  10732776 ggttcgaaccttgaaccttgtatatattatgcattgttcataccaattgagttaagctcacg 10732837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 32192954 - 32192917
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtc 61  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  32192954 ggttcgaaccccgaaccttgcatatattatgcattgtc 32192917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 33620958 - 33620921
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtc 61  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  33620958 ggttcgaactccgaaccttgtatatattatgcattgtc 33620921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 444182 - 444139
Alignment:
Q  25 gttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    |||||||||||||| |||| || ||||||||||||||||||||||    
T  444182 gttcgaaccccgaa-cttgcatgtattatgcattgtctttaccaa 444139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 8072788 - 8072752
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgt 60  Q
    ||||||||||||| | |||||||||||||||||||||    
T  8072788 ggttcgaaccccggaccttgtatatattatgcattgt 8072752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 11104824 - 11104788
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgt 60  Q
    |||||||| |||||| |||||||||||||||||||||    
T  11104824 ggttcgaatcccgaaccttgtatatattatgcattgt 11104788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 12249491 - 12249547
Alignment:
Q  29 gaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||| ||||| |||| ||||||||| |||| ||||||||||| |||||||| |||||    
T  12249491 gaacaccgaaccttgcatatattatacattatctttaccaattgagttaagctcacg 12249547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 35700401 - 35700441
Alignment:
Q  29 gaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||||||||| ||| |||||||||||||||||| ||||||    
T  35700401 gaaccccgaattttgcatatattatgcattgtctctaccaa 35700441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 40167399 - 40167327
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaag 79  Q
    ||||| |||||| ||  |||| ||| |||||| ||||||||||||||||||||||  ||||||  ||||||||    
T  40167399 ttttttgtggtggccggggtttgaatcccgaaccttgtatatattatgcattgtccataccaactgagttaag 40167327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 42982934 - 42982890
Alignment:
Q  35 cgaatcttgtatatattatgcattgtctttaccaatcgagttaag 79  Q
    |||| ||||||||||||||| |||||| ||||||| |||||||||    
T  42982934 cgaaccttgtatatattatgtattgtccttaccaaccgagttaag 42982890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 14124359 - 14124300
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||| |||||||||||||||||||||||||||||| |||||||   |||||||||||||    
T  14124359 ttcgatccccgaatcttgtatatattatgcattgtccttaccaactaagttaagttcacg 14124300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 29667889 - 29667933
Alignment:
Q  41 ttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||    
T  29667889 ttgtatatattatgcattgtttttaccaattgagttaagttcacg 29667933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 43108646 - 43108574
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaag 79  Q
    ||||| |||||||||| | ||||||||| ||| |||| ||||||||||||||||| |||||||  ||||||||    
T  43108646 ttttttgtggtgtccaagattcgaaccctgaaccttgcatatattatgcattgtccttaccaactgagttaag 43108574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 11647255 - 11647196
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||||||||| || |||| ||||||||||||||||| |||||||  ||||||||||||||    
T  11647255 ttcgaaccccaaaccttgcatatattatgcattgtccttaccaactgagttaagttcacg 11647196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 16752505 - 16752548
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    |||||||||||||||||| ||||||||||||||||| |||||||    
T  16752505 ttcgaaccccgaatcttgcatatattatgcattgtccttaccaa 16752548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 29560892 - 29560951
Alignment:
Q  25 gttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcac 84  Q
    ||||||||| ||||||||| ||||||||| ||||||  |||||||| |||||||||||||    
T  29560892 gttcgaacctcgaatcttgcatatattatacattgttgttaccaattgagttaagttcac 29560951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 18981180 - 18981245
Alignment:
Q  14 tggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaag 79  Q
    ||||||||||| ||||||||||||| |||  ||||||||||||||||  |||||| | ||||||||    
T  18981180 tggtgtccatgattcgaaccccgaaccttacatatattatgcattgttcttaccatttgagttaag 18981245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 23118034 - 23118119
Alignment:
Q  6 ctttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaaca 91  Q
    |||||| ||||||||||  ||||||||||| || |||  ||||||||||||||||| ||| |||  |||||||| ||||| |||||    
T  23118034 ctttttggtggtgtccagagttcgaaccccaaaccttacatatattatgcattgtccttatcaactgagttaagctcacgagaaca 23118119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 31159499 - 31159434
Alignment:
Q  14 tggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaag 79  Q
    ||||||||  ||||||||||| |||||||| |||||||||| |||||||||| |||  ||||||||    
T  31159499 tggtgtccggggttcgaaccctgaatcttgcatatattatgtattgtctttatcaactgagttaag 31159434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 37932409 - 37932320
Alignment:
Q  5 tctttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaacaaac 94  Q
    ||||||| |||||| ||| ||||||||||||| | |||| |||||||||||||||||  ||||||  ||| |||| ||||| | ||||||    
T  37932409 tcttttttgtggtggccagggttcgaaccccggaccttgcatatattatgcattgtccataccaactgagctaagctcacgaggacaaac 37932320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 5246162 - 5246214
Alignment:
Q  29 gaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagtt 81  Q
    ||||| |||| |||| |||||||||||||||||| ||||||| ||||||||||    
T  5246162 gaacctcgaaccttgcatatattatgcattgtctataccaattgagttaagtt 5246214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 20175886 - 20175826
Alignment:
Q  25 gttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||||||||||||| |||| ||||||||||||| || |||  |||||||| |||||    
T  20175886 gttcgaaccccgaatcttgcatattttatgcattgtctctaacaactgagttaagctcacg 20175826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 30971071 - 30971155
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaaca 91  Q
    ||||| ||||||| || ||||||||||||| |||||| ||||||| |||| |||| || | ||| ||| |||| |||||||||||    
T  30971071 ttttttgtggtgttcaaggttcgaaccccggatcttgcatatattgtgcactgtccttgctaattgagctaagctcacgtgaaca 30971155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 35109477 - 35109397
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtg 87  Q
    ||||| |||||||||  | |||||||| || | |||| |||||||||| ||||||||||||||  |||||||| |||||||    
T  35109477 ttttttgtggtgtccgggattcgaacctcggaccttgcatatattatgtattgtctttaccaactgagttaagctcacgtg 35109397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 2053103 - 2053040
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaat 70  Q
    ||||| |||||| ||| ||||||||| ||| | ||||||||| |||||||||||| ||||||||    
T  2053103 ttttttgtggtggccagggttcgaactccggaccttgtatattttatgcattgtccttaccaat 2053040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 6237722 - 6237757
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtc 61  Q
    |||||||||||||||||| |||||||||||||||||    
T  6237722 ttcgaaccccgaatcttgcatatattatgcattgtc 6237757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 34206280 - 34206233
Alignment:
Q  31 accccgaatcttgtatatattatgcattgtctttaccaatcgagttaa 78  Q
    |||||||| |||| |||||||||||||||||||||||||  |||||||    
T  34206280 accccgaaccttgcatatattatgcattgtctttaccaactgagttaa 34206233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 37339763 - 37339802
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtcttta 65  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  37339763 ttcgaaccctgaattttgtatatattatgcattgtcttta 37339802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 4763187 - 4763241
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaa 78  Q
    |||| |||||||| | |||  |||||||||||||||||||||||||| |||||||    
T  4763187 ggtttgaaccccggaccttacatatattatgcattgtctttaccaattgagttaa 4763241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 6424904 - 6424962
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttc 82  Q
    |||| |||||||| | ||||||||||||||||||||||  |||||| ||||| ||||||    
T  6424904 ggtttgaaccccggaccttgtatatattatgcattgtccctaccaaccgagtcaagttc 6424962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 9628177 - 9628115
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtct-ttaccaatcgagttaagttcacg 85  Q
    ||||||||||||||||| || |||||||||||||| ||| |||||||  |||||||| |||||    
T  9628177 ggttcgaaccccgaatcctgcatatattatgcattatctcttaccaaatgagttaagctcacg 9628115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 11844441 - 11844507
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaacaa 92  Q
    |||||||||  || |||| ||||||||||||||||| |||||||  ||| |||||||||||| ||||    
T  11844441 ttcgaaccctaaaccttgcatatattatgcattgtccttaccaactgagctaagttcacgtggacaa 11844507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 27679575 - 27679513
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||| |||||||||  | || |||||||||| |||| |||||||||||||| ||||||||||    
T  27679575 ttttttgtggtgtccgggatttgaaccccgaaccttgcatatattatgcattatctttaccaa 27679513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 28604402 - 28604464
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||| ||||||||| || ||||||||||| | |||  || ||||||||||||||||||||||    
T  28604402 ttttttgtggtgtccgtgattcgaaccccggaccttacatttattatgcattgtctttaccaa 28604464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 34702567 - 34702489
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||| |||||| ||| | ||||||||||| | |||  ||||||||||||||||| |||||||  |||||||| |||||    
T  34702567 ttttttgtggtggccaggattcgaaccccggacctttcatatattatgcattgtccttaccaactgagttaagctcacg 34702489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 9123829 - 9123906
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcac 84  Q
    ||||| ||||||||   |||||||||  || |||||  |||||||||||||||||||||||||  |||||||| ||||    
T  9123829 ttttttgtggtgtctgaggttcgaacttcggatcttacatatattatgcattgtctttaccaactgagttaagctcac 9123906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 11637573 - 11637634
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||||||||| |||| |||| ||||||||||||  ||||||  |||||||| |||||    
T  11637573 ggttcgaaccccgaaccttgcatattttatgcattgtccataccaactgagttaagctcacg 11637634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 13914465 - 13914502
Alignment:
Q  45 atatattatgcattgtctttaccaatcgagttaagttc 82  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  13914465 atatattatgcactgtctttaccaattgagttaagttc 13914502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 39914945 - 39914900
Alignment:
Q  40 cttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||| ||||||||||||||||| |||||||| |||||||| |||||    
T  39914945 cttgcatatattatgcattgtccttaccaattgagttaagctcacg 39914900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 2637937 - 2637885
Alignment:
Q  40 cttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaacaa 92  Q
    |||||||||||||| |||| || ||||||| ||||||||||| ||||| ||||    
T  2637937 cttgtatatattattcattatcgttaccaaccgagttaagtttacgtgtacaa 2637885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 3955604 - 3955560
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtctttaccaat 70  Q
    |||||||||||||  ||  ||||||||||||||||||||||||||    
T  3955604 ttcgaaccccgaacattacatatattatgcattgtctttaccaat 3955560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 8544991 - 8545059
Alignment:
Q  25 gttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaacaaa 93  Q
    |||||||| ||| | |||| ||||||||||||||||| ||| |||  |||||||| ||||| |||||||    
T  8544991 gttcgaactccggaccttgcatatattatgcattgtccttatcaactgagttaagctcacgagaacaaa 8545059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 14681260 - 14681300
Alignment:
Q  29 gaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    |||||||||| ||| ||||||||||||||| ||||||||||    
T  14681260 gaaccccgaaccttctatatattatgcattatctttaccaa 14681300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 2391067 - 2391006
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||  ||| ||||||||||    
T  2391067 ggttcgaaccccggatcttgtatatattatgcattgttcttaccaactgagctaagttcacg 2391006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 32896448 - 32896520
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaag 79  Q
    ||||| ||||||||   |||||||||||| ||||||||||||||||||||||||| || ||||  ||||||||    
T  32896448 ttttttgtggtgtctgaggttcgaaccccaaatcttgtatatattatgcattgtccttcccaactgagttaag 32896520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 7872733 - 7872812
Alignment:
Q  8 ttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtg 87  Q
    |||| |||||||||  ||||||||||||  | |||| ||||||||||||||||| |||||||  ||| ||||||||||||    
T  7872733 ttttggtggtgtcctgggttcgaaccccagaccttgcatatattatgcattgtccttaccaactgagctaagttcacgtg 7872812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 8879747 - 8879809
Alignment:
Q  23 tggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||| |||||| |||| |||||||||||||||||| ||||||  |||||||| |||||    
T  8879747 tggttcgaatcccgaaccttgcatatattatgcattgtctataccaactgagttaagctcacg 8879809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 20103438 - 20103516
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||| ||||||||   ||||||||||||| | |||||| ||||||||||||||| |||||||  |||||||| |||||    
T  20103438 tttttggtggtgtctggggttcgaaccccggaccttgtaaatattatgcattgtccttaccaactgagttaagctcacg 20103516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 36731181 - 36731147
Alignment:
Q  44 tatatattatgcattgtctttaccaatcgagttaa 78  Q
    |||||||||||||||||||||||||||||||||||    
T  36731181 tatatattatgcattgtctttaccaatcgagttaa 36731147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 27263401 - 27263340
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||| ||||| |||| |||||||||||||||||  ||||||  ||||||||||||||    
T  27263401 ggttcgaactccgaaccttgcatatattatgcattgtccataccaactgagttaagttcacg 27263340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 27270295 - 27270234
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||| ||||| |||| |||||||||||||||||  ||||||  ||||||||||||||    
T  27270295 ggttcgaactccgaaccttgcatatattatgcattgtccataccaactgagttaagttcacg 27270234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 47343266 - 47343189
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcac 84  Q
    ||||| ||||||||||   ||||||||||  |||||| ||  |||||||| ||||||||||||| |||||||||||||    
T  47343266 ttttttgtggtgtccaatattcgaaccccagatcttgcattgattatgcactgtctttaccaattgagttaagttcac 47343189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 45425511 - 45425459
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaa 78  Q
    ||||||||||||| |||| ||||||||||||||||||||| |||  |||||||    
T  45425511 ttcgaaccccgaaccttgcatatattatgcattgtctttatcaactgagttaa 45425459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 46987157 - 46987101
Alignment:
Q  13 gtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    |||||||||  ||||||||||||| | |||| ||||||||||||||||| |||||||    
T  46987157 gtggtgtccggggttcgaaccccggaccttgcatatattatgcattgtccttaccaa 46987101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 2962733 - 2962788
Alignment:
Q  30 aaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||| |||| |||||||||||||| ||||||||||| ||  ||||||||||    
T  2962733 aaccccgaaccttgcatatattatgcattatctttaccaattgaactaagttcacg 2962788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 41860265 - 41860320
Alignment:
Q  30 aaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||||| |||||| |||||||||||||||||||||| ||||  ||||||| |||||    
T  41860265 aaccccaaatcttatatatattatgcattgtctttatcaattaagttaagctcacg 41860320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 24071504 - 24071450
Alignment:
Q  34 ccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtga 88  Q
    |||||| ||||||||||||||| || |||||| |||| |||||||| ||||||||    
T  24071504 ccgaattttgtatatattatgcgttatctttatcaattgagttaagctcacgtga 24071450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 32315300 - 32315214
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaacaaa 93  Q
    ||||| ||||||  || ||||||||||| ||| |||| |||||||||| | |||| ||| |||  |||||||| |||||||||||||    
T  32315300 ttttttgtggtggtcagggttcgaaccctgaaccttgcatatattatgtaatgtccttatcaactgagttaagctcacgtgaacaaa 32315214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 48837944 - 48837870
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagtt 81  Q
    |||||||||||| ||  |||||||||||| ||  ||| |||||||||||||| ||  ||||||| ||||||||||    
T  48837944 tttttagtggtggccggggttcgaaccccaaactttgcatatattatgcattatccataccaattgagttaagtt 48837870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 24991840 - 24991796
Alignment:
Q  25 gttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||||| |||| |||||| ||||||||||||||||| |||||||    
T  24991840 gttcgaatcccgtatcttgcatatattatgcattgtccttaccaa 24991796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 25246826 - 25246790
Alignment:
Q  29 gaaccccgaatcttgtatatattatgcattgtcttta 65  Q
    |||||| |||||||| |||||||||||||||||||||    
T  25246826 gaacccagaatcttgcatatattatgcattgtcttta 25246790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 35666342 - 35666302
Alignment:
Q  45 atatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  35666342 atatattatgcattgtccttaccaaccgagttaagctcacg 35666302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 2445359 - 2445323
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgt 60  Q
    |||||||||||||||||||||||||||||||||||||    
T  2445359 ggttcgaaccccgaatcttgtatatattatgcattgt 2445323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 9923317 - 9923254
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaat 70  Q
    ||||| |||||||||| |||| ||| |||||| |||||||||||||||||||||| ||| ||||    
T  9923317 ttttttgtggtgtccaaggtttgaatcccgaaccttgtatatattatgcattgtccttatcaat 9923254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 14679183 - 14679124
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||||| ||| || |||| ||||||||||||||||| ||||||| |||||||||||||||    
T  14679183 ttcgaaacccaaaccttgcatatattatgcattgtccttaccaaccgagttaagttcacg 14679124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 8629697 - 8629758
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||| |||||||||| |||| |||||||||||||||||  ||||||| |||||||| |||||    
T  8629697 ggtttgaaccccgaaccttgcatatattatgcattgtccataccaattgagttaagctcacg 8629758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 2726401 - 2726475
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagtt 81  Q
    ||||| |||||| ||  ||||||||||||| | |||| |||||||||||||||||  ||||||  ||||||||||    
T  2726401 ttttttgtggtgaccggggttcgaaccccggaccttgcatatattatgcattgtccataccaactgagttaagtt 2726475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 2213341 - 2213296
Alignment:
Q  40 cttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||    
T  2213341 cttgcatatattatgcattgttcttaccaattgagttaagttcacg 2213296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 8381195 - 8381256
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||||| | | |||| |||| ||||||||||||||||||||  |||||||| |||||    
T  8381195 ggttcgaaccctggaccttgcatatgttatgcattgtctttaccaactgagttaagctcacg 8381256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 23629854 - 23629899
Alignment:
Q  40 cttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||| ||||||||||||||||| |||||||| ||| ||||||||||    
T  23629854 cttgcatatattatgcattgtcattaccaattgagctaagttcacg 23629899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 6470606 - 6470678
Alignment:
Q  13 gtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||||| ||| | ||| ||||||||| |||  ||||||||||||||||||||| |||  |||||||| |||||    
T  6470606 gtggtggccaggattcaaaccccgaaacttacatatattatgcattgtctttatcaactgagttaagctcacg 6470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 26522519 - 26522487
Alignment:
Q  37 aatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||||||||||||||||||||||| |||||||    
T  26522519 aatcttgtatatattatgcattgtccttaccaa 26522487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 7922245 - 7922320
Alignment:
Q  17 tgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaacaaa 93  Q
    |||||| ||||||||||| || ||||| |||||||||||||||||||||||||  ||| |||| ||||||| |||||    
T  7922245 tgtccagggttcgaacccgga-tcttgcatatattatgcattgtctttaccaactgagataagctcacgtggacaaa 7922320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 19854642 - 19854588
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtc 61  Q
    ||||| |||||||||  ||||||||||||| |||||| |||||||||||||||||    
T  19854642 ttttttgtggtgtccgaggttcgaaccccggatcttgcatatattatgcattgtc 19854588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 20131485 - 20131427
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcac 84  Q
    |||||||||||  ||||||||||||||||||||||| || ||||  |||||||||||||    
T  20131485 ttcgaaccccgggtcttgtatatattatgcattgtccttgccaactgagttaagttcac 20131427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 46409471 - 46409541
Alignment:
Q  13 gtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttca 83  Q
    ||||||| || || |||||||| |||  ||| |||||||||||||||||||||||||  ||||||||||||    
T  46409471 gtggtgttcagggatcgaaccctgaactttgcatatattatgcattgtctttaccaactgagttaagttca 46409541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 41346815 - 41346755
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||||| || |||||||||||||||||||||| | || |||| ||||||||||||||    
T  41346815 ggttcgaaccctga-tcttgtatatattatgcattgtttctatcaattgagttaagttcacg 41346755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 24488493 - 24488421
Alignment:
Q  13 gtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||||||||  ||||| || | |||| |||||||||||||||||||||| |||||||  |||||||| |||||    
T  24488493 gtggtgtccgaggttcaaatctcgaaccttgtatatattatgcattgtcattaccaactgagttaagatcacg 24488421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 28568265 - 28568229
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgt 60  Q
    |||| ||||||||||||||||||||||||||||||||    
T  28568265 ggtttgaaccccgaatcttgtatatattatgcattgt 28568229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 10303512 - 10303583
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaacaaact 95  Q
    ||||||||||||| |||||| |||| |||||||||||| |||||||  ||| |||| ||||| | |||||||    
T  10303512 ggttcgaaccccggatcttgcatattttatgcattgtccttaccaactgagctaagctcacgaggacaaact 10303583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 34833990 - 34834045
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtct 62  Q
    ||||| ||||||||||  |||||||||||| | |||| ||||||||||||||||||    
T  34833990 tttttggtggtgtccagtgttcgaaccccggaccttgcatatattatgcattgtct 34834045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 34960158 - 34960213
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaag 79  Q
    |||||||||| |||||||| ||||||||||||||||| | ||||||  ||||||||    
T  34960158 ggttcgaacctcgaatcttatatatattatgcattgtttataccaactgagttaag 34960213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 17134165 - 17134119
Alignment:
Q  44 tatatattatgcattgtctttaccaatcgagttaagttcacgtgaac 90  Q
    ||||||||||||||||||| ||||||| |||||||| ||||| ||||    
T  17134165 tatatattatgcattgtctctaccaattgagttaagctcacgagaac 17134119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 29808252 - 29808306
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtc 61  Q
    ||||| |||||||||| ||||||||||||  | |||| |||||||||||||||||    
T  29808252 ttttttgtggtgtccaaggttcgaaccccataccttgcatatattatgcattgtc 29808306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 43354239 - 43354293
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaa 78  Q
    |||| ||||| | ||||||||||||| |||||||||||| ||||||| |||||||    
T  43354239 ggtttgaacctcaaatcttgtatataatatgcattgtctataccaattgagttaa 43354293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 12671749 - 12671794
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||||||||||| |||||| |||| ||||||||||||| ||||||    
T  12671749 ggttcgaaccccggatcttgcatattttatgcattgtctataccaa 12671794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 15988477 - 15988432
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||||||||||| | |||||||||| ||||||||||| |||||||    
T  15988477 ggttcgaaccccggaccttgtatatagtatgcattgtccttaccaa 15988432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 23225925 - 23225864
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||| ||||||||||||||| |||||||||| |||||   ||||||  ||||||||||||||    
T  23225925 ggtttgaaccccgaatcttgcatatattatgaattgttcctaccaactgagttaagttcacg 23225864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 24785463 - 24785508
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||||||||||  | |||||||||||||||||||||| |||||||    
T  24785463 ggttcgaaccccagaccttgtatatattatgcattgtccttaccaa 24785508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 24822803 - 24822758
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||||||||||  | |||||||||||||||||||||| |||||||    
T  24822803 ggttcgaaccccagaccttgtatatattatgcattgtccttaccaa 24822758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 48317725 - 48317794
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaacaaa 93  Q
    ||||||||||||||| ||||||||| |||| || |||  |||||||  |||||||| || ||||||||||    
T  48317725 ggttcgaaccccgaaccttgtatattttatacactgttcttaccaactgagttaagctcgcgtgaacaaa 48317794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 49473705 - 49473660
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||||||||||| | |||| ||||||||||||||||| |||||||    
T  49473705 ggttcgaaccccggaccttgcatatattatgcattgtccttaccaa 49473660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 6520130 - 6520070
Alignment:
Q  25 gttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||| | || |||| |||||||||||||||||||||| ||  |||||||| |||||    
T  6520130 gttcgaacctcaaaccttgcatatattatgcattgtctttactaactgagttaagatcacg 6520070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 11144649 - 11144725
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttca 83  Q
    ||||| |||||||||  ||||| ||||||  | |||| ||||||||||||||||||||| |||  ||| ||||||||    
T  11144649 tttttggtggtgtccggggttcaaaccccagaccttgcatatattatgcattgtctttatcaactgaggtaagttca 11144725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 12712032 - 12712080
Alignment:
Q  37 aatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||| |||||||||||||||||| || |||  ||||||||||||||    
T  12712032 aatcttgcatatattatgcattgtctctatcaaatgagttaagttcacg 12712080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 13304158 - 13304110
Alignment:
Q  37 aatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||||||||||||||||| ||| ||  |||||| |||||||||||||||    
T  13304158 aatcttgtatatattatgtattatccctaccaaccgagttaagttcacg 13304110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 19908752 - 19908692
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcac 84  Q
    |||||||||| || | |||| ||||||||||||||||| |||||||  |||||||| ||||    
T  19908752 ggttcgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaagctcac 19908692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 36071203 - 36071159
Alignment:
Q  25 gttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    |||||||||||||| |||  ||||||||||||||||| |||||||    
T  36071203 gttcgaaccccgaaccttacatatattatgcattgtccttaccaa 36071159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 34890 - 34957
Alignment:
Q  25 gttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaacaa 92  Q
    |||||||||| | | |||| ||||||||||||||||| |||||||  |||||||| ||||||||||||    
T  34890 gttcgaaccctggaccttgcatatattatgcattgtccttaccaactgagttaagctcacgtgaacaa 34957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 9639801 - 9639879
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||| |||||||||  ||||||||| ||| | |||| ||||||||||||||||| |||||||  |||||||| |||||    
T  9639801 ttttttgtggtgtccgaggttcgaactccggaccttgcatatattatgcattgtccttaccaagtgagttaagctcacg 9639879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 10132428 - 10132490
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||| |||||||||| ||||||||||||  | |||| ||||||||||||||||| |||||||    
T  10132428 ttttttgtggtgtccaaggttcgaaccccagaccttgcatatattatgcattgtccttaccaa 10132490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 17284028 - 17283966
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||| |||||||||| ||||||||||| | | |||| ||||||||||||||||| |||||||    
T  17284028 ttttttgtggtgtccagggttcgaaccctggaccttgcatatattatgcattgtccttaccaa 17283966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 35474029 - 35473951
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||| |||||||||  ||||||||||| ||| |||| |||||||||||||| || |||||||| ||| |||| |||||    
T  35474029 tttttggtggtgtccggggttcgaaccctgaaccttgcatatattatgcattatccttaccaattgagctaagctcacg 35473951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 23221221 - 23221282
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||||| | ||||||||||| |||||||||||||| |||||| |||| |||||||| |||||    
T  23221221 ggttcgcagcccgaatcttgcatatattatgcattttctttatcaattgagttaagatcacg 23221282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 47417860 - 47417784
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttca 83  Q
    ||||| |||||| ||  |||| |||| ||||| |||| ||||||||||||||||| | |||||| ||||||||||||    
T  47417860 tttttggtggtgaccgaggtttgaactccgaaccttgcatatattatgcattgtcctaaccaattgagttaagttca 47417784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 18306077 - 18306022
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccg-aatcttgtatatattatgcattgtc 61  Q
    ||||| |||||||||| |||||||||||||  |||||| |||||||||||||||||    
T  18306077 tttttggtggtgtccagggttcgaaccccgttatcttgcatatattatgcattgtc 18306022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 18521285 - 18521246
Alignment:
Q  46 tatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  18521285 tatattatgcattgtccttaccaattgagttaagttcacg 18521246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 26256073 - 26256124
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcatt 58  Q
    ||||| |||| ||||| ||||||||||||| |||||| ||||||||||||||    
T  26256073 tttttggtggagtccagggttcgaaccccggatcttgcatatattatgcatt 26256124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 34429882 - 34429827
Alignment:
Q  14 tggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||||||| ||||||||| | ||| |||| |||||| ||||||||||||||||||    
T  34429882 tggtgtccagggttcgaactctgaaccttgcatatatcatgcattgtctttaccaa 34429827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 44221064 - 44221009
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtct 62  Q
    ||||| |||||||||| ||||||||||||  | |||||||||||| ||||||||||    
T  44221064 tttttggtggtgtccaaggttcgaaccccagaccttgtatatattgtgcattgtct 44221009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 47719110 - 47719181
Alignment:
Q  26 ttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaacaaactaa 97  Q
    ||||||| ||||| |||| |||||||||||||| || |||||||  |||||||| ||||||| |||| ||||    
T  47719110 ttcgaactccgaaccttgcatatattatgcattatccttaccaactgagttaagctcacgtggacaatctaa 47719181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 8210369 - 8210431
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||| |||||| ||  ||||||||||| | | |||||||||||||||||||||| |||||||    
T  8210369 ttttttgtggtggccggggttcgaaccctggaccttgtatatattatgcattgtccttaccaa 8210431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 21638190 - 21638112
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||| |||||||||  ||||||||||||| | |||| |||||| ||||||||||  ||||||| ||| |||| |||||    
T  21638190 tttttggtggtgtccggggttcgaaccccggaccttgcatatatcatgcattgtccgtaccaattgagctaagctcacg 21638112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 45224294 - 45224340
Alignment:
Q  38 atcttgtatatattatgcattgtctttaccaatcgagttaagttcac 84  Q
    ||||||||||||||||| |||||| |||||||| |||||||| ||||    
T  45224294 atcttgtatatattatgaattgtccttaccaattgagttaagctcac 45224340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 7616827 - 7616872
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    ||||||||||||| ||||||||||| ||||| ||||||| ||||||    
T  7616827 ggttcgaaccccggatcttgtatattttatgtattgtctctaccaa 7616872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 25942636 - 25942689
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgt 60  Q
    |||||||||||| |||  |||||||||||||| ||| ||||| |||||||||||    
T  25942636 tttttagtggtggccaaagttcgaaccccgaaccttatatattttatgcattgt 25942689  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 27853415 - 27853354
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||||||| |||| |||||||||||||||||||||||   ||||||  |||||||| |||||    
T  27853415 ggttcgaatcccggatcttgtatatattatgcattgttcataccaactgagttaagctcacg 27853354  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 50466307 - 50466384
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcac 84  Q
    ||||| |||||| ||  ||||||||| ||||  |||||||||||||| |||| || |||||||| |||||||| ||||    
T  50466307 ttttttgtggtgaccgaggttcgaactccgacccttgtatatattatacattatccttaccaattgagttaaggtcac 50466384  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 50849066 - 50849147
Alignment:
Q  16 gtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaacaaactaa 97  Q
    ||||||| || || ||| ||||| |||  ||||||||||||||||| |||||||  |||||||| ||||| |||| ||||||    
T  50849066 gtgtccagggatcaaactccgaaccttacatatattatgcattgtcattaccaactgagttaagctcacgagaacgaactaa 50849147  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 1091234 - 1091178
Alignment:
Q  29 gaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    |||||||||| |||| ||| |||||||||||||| ||||||  |||||||| |||||    
T  1091234 gaaccccgaaccttgcatacattatgcattgtctataccaactgagttaagctcacg 1091178  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 19262885 - 19262977
Alignment:
Q  1 tttatctttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacgtgaacaaa 93  Q
    ||||| ||||| ||||||||   |||||||||||||||  ||| |||| |||||||||||| ||| |||  ||| |||| ||||||| |||||    
T  19262885 tttatttttttggtggtgtctggggttcgaaccccgaactttgcatatgttatgcattgtccttatcaactgagctaagctcacgtggacaaa 19262977  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 38448856 - 38448912
Alignment:
Q  13 gtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    |||||||||  | ||||||||||| | |||| ||||||||||||||||| |||||||    
T  38448856 gtggtgtccgggattcgaaccccggaccttgcatatattatgcattgtccttaccaa 38448912  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 41973332 - 41973260
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaag 79  Q
    ||||| |||||| ||  ||||||||||||| | |||| |||||||||||||||||  |||||||  |||||||    
T  41973332 ttttttgtggtggccggggttcgaaccccggaccttgcatatattatgcattgtccctaccaattaagttaag 41973260  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 45481552 - 45481508
Alignment:
Q  25 gttcgaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    |||||||||||| | |||| ||||||||||||||||| |||||||    
T  45481552 gttcgaaccccggaccttgcatatattatgcattgtccttaccaa 45481508  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 48898498 - 48898538
Alignment:
Q  29 gaaccccgaatcttgtatatattatgcattgtctttaccaa 69  Q
    |||||||||| |||| |||||||||||| ||||||||||||    
T  48898498 gaaccccgaaccttgcatatattatgcactgtctttaccaa 48898538  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 52853031 - 52853067
Alignment:
Q  24 ggttcgaaccccgaatcttgtatatattatgcattgt 60  Q
    |||||||||| | ||||||||||||||||||||||||    
T  52853031 ggttcgaacctcaaatcttgtatatattatgcattgt 52853067  T

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Target: scaffold0533 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 8852 - 8913
Alignment:
Q  25 gttcgaacccc-gaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||||||||| | |||||| ||||||||||||||||| |||||||| |||||||| |||||    
T  8852 gttcgaacccctggatcttgcatatattatgcattgtccttaccaattgagttaagctcacg 8913  T

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Target: scaffold0238 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 25466 - 25388
Alignment:
Q  7 tttttagtggtgtccatggttcgaaccccgaatcttgtatatattatgcattgtctttaccaatcgagttaagttcacg 85  Q
    ||||| ||||||||   ||||||||||| | | |||| ||||||||||||||||| |||||||  |||||||| |||||    
T  25466 tttttggtggtgtctggggttcgaaccctggaccttgcatatattatgcattgtccttaccaactgagttaagctcacg 25388  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 119966 - 120010
Alignment:
Q  35 cgaatcttgtatatattatgcattgtctttaccaatcgagttaag 79  Q
    |||| |||| ||||||||||||||||| ||||||| |||||||||    
T  119966 cgaaccttgcatatattatgcattgtccttaccaaccgagttaag 120010  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 210090 - 210134
Alignment:
Q  35 cgaatcttgtatatattatgcattgtctttaccaatcgagttaag 79  Q
    |||| |||| ||||||||||||||||| ||||||| |||||||||    
T  210090 cgaaccttgcatatattatgcattgtccttaccaaccgagttaag 210134  T

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