View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20208_low_6 (Length: 465)

Name: NF20208_low_6
Description: NF20208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20208_low_6
NF20208_low_6
[»] chr2 (3 HSPs)
chr2 (13-288)||(37489156-37489436)
chr2 (347-447)||(37489434-37489534)
chr2 (54-106)||(15915585-15915637)
[»] chr5 (2 HSPs)
chr5 (54-321)||(32716612-32716881)
chr5 (360-410)||(32716524-32716575)
[»] chr7 (3 HSPs)
chr7 (54-173)||(33781623-33781742)
chr7 (260-370)||(46887334-46887445)
chr7 (45-100)||(30401451-30401506)
[»] chr1 (2 HSPs)
chr1 (54-162)||(35996164-35996272)
chr1 (64-160)||(25446992-25447088)
[»] chr4 (2 HSPs)
chr4 (45-142)||(13921848-13921945)
chr4 (45-125)||(13922519-13922599)
[»] chr3 (2 HSPs)
chr3 (61-125)||(50362907-50362971)
chr3 (118-161)||(10703382-10703425)
[»] scaffold2136 (1 HSPs)
scaffold2136 (54-142)||(595-683)
[»] chr8 (3 HSPs)
chr8 (45-127)||(19475119-19475201)
chr8 (45-127)||(19546044-19546126)
chr8 (45-127)||(19586570-19586652)
[»] chr6 (2 HSPs)
chr6 (45-139)||(15882165-15882259)
chr6 (64-125)||(15882826-15882887)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 37489156 - 37489436
Alignment:
Q  13 aatatacattaaaagg-----agtcagatactttgtaaccagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggc 107  Q
    ||||||||||||||||     |||||||| |||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37489156 aatatacattaaaaggttaaaagtcagatcctttgtaaccaagtgcaagtctaataacttacaccaaatcttaagcattaaattaacttaatccaatggc 37489255  T
Q  108 ttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaattccctctcccttctcttgtcccaacatttgcttgaagtcattctttctaaattg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37489256 ttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaattccctctcccttctcttgtcccaacatttgcttgaagtcattctttctaaattg 37489355  T
Q  208 ctttcgatttcaatgcttatatttcatcgacgagtagagatcaaagtgatgtttctccattgattgcagaccttacttttg 288  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37489356 ctttcgatttcaatgcgtatatttcatcgacgagtagagatcaaagtgatgtttctccattgattgcagaccttacttttg 37489436  T

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Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 347 - 447
Target Start/End: Original strand, 37489434 - 37489534
Alignment:
Q  347 ttgagaagattaataaattaaaattaacgtaaattggaatataaaattgaagctttcaattaagaccaatgataaccataaatagcaaacacccaatttg 446  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37489434 ttgagaagattaataaattaaaattaacgtgaattagaatataaaattgaagctttcaattaagaccaatgataaccataaatagcaaacacccaatttg 37489533  T
Q  447 g 447  Q
    |    
T  37489534 g 37489534  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 15915585 - 15915637
Alignment:
Q  54 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatgg 106  Q
    ||||||||||||||||| ||||| |||| | ||||||||| |||||| |||||    
T  15915585 aagtctaataacttacatcaaattttaatcgttaaattaaattaatctaatgg 15915637  T

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Target: chr5 (Bit Score: 111; Significance: 8e-56; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 54 - 321
Target Start/End: Complemental strand, 32716881 - 32716612
Alignment:
Q  54 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaat 153  Q
    |||| |||| |||||||||||||||||| | | |||||||||||||||||||||||||||  |||||||||||||||||| || ||||||| | ||||||    
T  32716881 aagtataatgacttacaccaaatcttaaccgtaaaattaacttaatccaatggcttccataaatcaaattaaaaggaatctaatgtgagacacgtacaat 32716782  T
Q  154 tccctctcccttctcttgtcccaacatttgcttgaagtcattctttctaaattgctttcgatttcaatgcttata--tttcatcgacgagtagagatcaa 251  Q
    ||||| || ||| |||||||||||| | |||||||| ||||||||||||||||||||  |||||   ||| ||||  | |||||||   || ||||||||    
T  32716781 tccctttctcttttcttgtcccaacgtctgcttgaaatcattctttctaaattgcttcagatttatttgcatatatctctcatcgatctgttgagatcaa 32716682  T
Q  252 agtgatgtttctccattgattgcagaccttacttttgcaagaacagaaaacagccaaaacggtgggtgga 321  Q
    |||| || ||||||||||||||    |||| |||||||||||||| |||||||||||| |||||||||||    
T  32716681 agtggtgcttctccattgattgtgcgccttgcttttgcaagaacacaaaacagccaaagcggtgggtgga 32716612  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 32716575 - 32716524
Alignment:
Q  360 taaattaaaattaacgtaaattggaatataaaa-ttgaagctttcaattaag 410  Q
    ||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||    
T  32716575 taaattaaaataaacgtgaattgaaatataaaaattgaagctttcaattaag 32716524  T

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Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 33781623 - 33781742
Alignment:
Q  54 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaat 153  Q
    ||||||||| |||||||||||||||||  | | || || |||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||    
T  33781623 aagtctaatgacttacaccaaatcttatccgtcaattttacttaatccaatggcttccatctatcaaattaaaagaagtcaaaagtgagacacatacgat 33781722  T
Q  154 tccctctcccttctcttgtc 173  Q
    ||||||||||||||||||||    
T  33781723 tccctctcccttctcttgtc 33781742  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 370
Target Start/End: Complemental strand, 46887445 - 46887334
Alignment:
Q  260 ttctccattgattgcaga-ccttacttttgcaagaacagaaaacagccaaaacggtgggtgga-caaacaaaaataaagggacttacaattgagaagatt 357  Q
    |||||||||||||| ||| |||||||||||||||||| | ||||| ||||| |||||||||||  ||||| || | || |||||| ||||||||||||||    
T  46887445 ttctccattgattg-agagccttacttttgcaagaacgggaaacaaccaaaccggtgggtggatgaaacataattgaaaggacttgcaattgagaagatt 46887347  T
Q  358 aataaattaaaat 370  Q
    ||| |||||||||    
T  46887346 aatgaattaaaat 46887334  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 30401506 - 30401451
Alignment:
Q  45 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatc 100  Q
    |||||||||||||||||||| ||||||||||||| || ||||||| ||| ||||||    
T  30401506 accagatgcaagtctaataaattacaccaaatctcaaccattaaactaaattaatc 30401451  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 35996164 - 35996272
Alignment:
Q  54 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaat 153  Q
    |||||||| ||| ||||||||||||||  |||||||||||  |||||||| | |||  || |  ||||||||||||||||||||||||||| ||| ||||    
T  35996164 aagtctaacaacctacaccaaatcttagccattaaattaaactaatccaacgacttatatttgacaaattaaaaggaatcaaaagtgagacacatgcaat 35996263  T
Q  154 tccctctcc 162  Q
    |||||||||    
T  35996264 tccctctcc 35996272  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 25447088 - 25446992
Alignment:
Q  64 acttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaattccctct 160  Q
    ||||||||||||||| || || |||||||| |||||| ||||||| | || |||||||||||||   ||| |||||||||| ||||||||| |||||    
T  25447088 acttacaccaaatctcaaccactaaattaaattaatctaatggctcctatttatcaaattaaaaaacatctaaagtgagacacatacaatttcctct 25446992  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 13921848 - 13921945
Alignment:
Q  45 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgag 142  Q
    |||||||| ||||||||| || |||||||||||| || |||||| |||| |||||| |||||||  ||| | |||||||||| | || ||||||||||    
T  13921848 accagatgtaagtctaatgacatacaccaaatctcaaccattaatttaaattaatctaatggctctcatatgtcaaattaaaggaaaccaaaagtgag 13921945  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 13922599 - 13922519
Alignment:
Q  45 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaa 125  Q
    |||||||  ||||||||| ||||||||||||||| || |||||| |||| |||||| |||||||  ||| |||||||||||    
T  13922599 accagatctaagtctaatgacttacaccaaatctcaaccattaatttaaattaatctaatggctctcatatatcaaattaa 13922519  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 50362971 - 50362907
Alignment:
Q  61 ataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaa 125  Q
    |||||||| ||||||||| || ||||||||||| ||||| ||||||||| ||| |||||||||||    
T  50362971 ataacttataccaaatctcaaccattaaattaaattaattcaatggctttcatatatcaaattaa 50362907  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 161
Target Start/End: Complemental strand, 10703425 - 10703382
Alignment:
Q  118 caaattaaaaggaatcaaaagtgagacgcatacaattccctctc 161  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||    
T  10703425 caaattaaaagaaatcaaaagcgagacacatacaattccctctc 10703382  T

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Target: scaffold2136 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold2136
Description:

Target: scaffold2136; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 683 - 595
Alignment:
Q  54 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgag 142  Q
    ||||||||||||||||||||||||||||   ||||||||| |||||| ||| | | || |  ||||||||||| | || ||||||||||    
T  683 aagtctaataacttacaccaaatcttaactgttaaattaaattaatctaatagatcccctacatcaaattaaaggaaaccaaaagtgag 595  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 19475201 - 19475119
Alignment:
Q  45 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaa 127  Q
    ||||| || ||||||||| |||| |||||||||| |  | ||||||||| |||||  ||||||||||||||  ||||||||||    
T  19475201 accaggtgtaagtctaatgacttgcaccaaatctcagccgttaaattaaattaatgtaatggcttccatcttccaaattaaaa 19475119  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 19546126 - 19546044
Alignment:
Q  45 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaa 127  Q
    ||||| || ||||||||| |||| |||||||||| |  | ||||||||| |||||  ||||||||||||||  ||||||||||    
T  19546126 accaggtgtaagtctaatgacttgcaccaaatctcagccgttaaattaaattaatgtaatggcttccatcttccaaattaaaa 19546044  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 19586570 - 19586652
Alignment:
Q  45 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaa 127  Q
    ||||| || ||||||||| |||| |||||||||| |  | ||||||||| |||||  ||||||||||||||  ||||||||||    
T  19586570 accaggtgtaagtctaatgacttgcaccaaatctcagccgttaaattaaattaatgtaatggcttccatcttccaaattaaaa 19586652  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 15882165 - 15882259
Alignment:
Q  45 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagt 139  Q
    ||||| || ||||||||| || |||||||||||| || |||||| |||| |||||| |||||||  ||| | ||||||||||   ||||||||||    
T  15882165 accaggtgtaagtctaatgacatacaccaaatctcaaccattaatttaaattaatctaatggctctcatatgtcaaattaaagaaaatcaaaagt 15882259  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 15882887 - 15882826
Alignment:
Q  64 acttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaa 125  Q
    ||||||||||||||| || |||||| |||| |||||| |||||||  ||| |||||||||||    
T  15882887 acttacaccaaatctcaaccattaatttaaattaatctaatggctctcatatatcaaattaa 15882826  T

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