View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20208_low_7 (Length: 414)
Name: NF20208_low_7
Description: NF20208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20208_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 235 - 373
Target Start/End: Complemental strand, 24887478 - 24887344
Alignment:
| Q |
235 |
gtgagattcagatgcagtgaaagtaataaacatacatacgtaccaatattcttcaaaaaacatacgtaccaatacaagtttgtaaggcttgagaatttcc |
334 |
Q |
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| T |
24887478 |
gtgagattcagatgcagtaaaagtaataaacatac----gtaccaatattcttcaaaaaacatacttaccaatacttgtttgtaaggcttgagaatttcc |
24887383 |
T |
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| Q |
335 |
tcttccctgaagctcgttgtgtctatacctcggtctttt |
373 |
Q |
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| T |
24887382 |
tcttccctgaagctcgttgtgtctatacctcggtctttt |
24887344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 24887563 - 24887507
Alignment:
| Q |
144 |
tttttccagattgttacctccactatataggtaccgatctaatattgaatatatata |
200 |
Q |
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| T |
24887563 |
tttttccagattgttacctccactatataggtaccgatctaatattgaatatatata |
24887507 |
T |
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