View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20209_high_11 (Length: 357)
Name: NF20209_high_11
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 100 - 336
Target Start/End: Original strand, 24757388 - 24757624
Alignment:
| Q |
100 |
aattagaacttataaaggcaacacaaaacgaaatatctaggtttaactagctctttctcattccagcnnnnnnncggcctaggttatagttttgtacggc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24757388 |
aattagaacttataaaggcaacacaaaacgaaatatctaggtttaactagctctttctcattccagcaaaaaaacggcctaggttatagttttgtacggc |
24757487 |
T |
|
| Q |
200 |
aattgcaaaaacggcatcaaatccatcaccaaagagcccaagttcgtggaagacatttggatctggtccgggagatccatccgatccatgtgcataccac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24757488 |
aattgcaaaaacggcatcaaatccatcaccaaagagcccaagatcgtggaagacatttggatctggtccgggagatccatccgatccatgtgcataccac |
24757587 |
T |
|
| Q |
300 |
atgtgcttaaatggatcatttgccatcacaaacagat |
336 |
Q |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
24757588 |
atgtgcttaaatggatcatttgtcatcacaaacagat |
24757624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 100 - 336
Target Start/End: Original strand, 24766385 - 24766621
Alignment:
| Q |
100 |
aattagaacttataaaggcaacacaaaacgaaatatctaggtttaactagctctttctcattccagcnnnnnnncggcctaggttatagttttgtacggc |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24766385 |
aattagaacttataaaggcaacacaaaacgaaatatctaggtttaactagctctttctcattccagcaaaaaaacggcctaggttatagttttgtacggc |
24766484 |
T |
|
| Q |
200 |
aattgcaaaaacggcatcaaatccatcaccaaagagcccaagttcgtggaagacatttggatctggtccgggagatccatccgatccatgtgcataccac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24766485 |
aattgcaaaaacggcatcaaatccatcaccaaagagcccaagatcgtggaagacatttggatctggtccgggagatccatccgatccatgtgcataccac |
24766584 |
T |
|
| Q |
300 |
atgtgcttaaatggatcatttgccatcacaaacagat |
336 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
24766585 |
atgtgcttaaatggatcatttgtcatcacaaacagat |
24766621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 176 - 332
Target Start/End: Complemental strand, 24995955 - 24995799
Alignment:
| Q |
176 |
gcctaggttatagttttgtacggcaattgcaaaaacggcatcaaatccatcaccaaagagcccaagttcgtggaagacatttggatctggtccgggagat |
275 |
Q |
| |
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|||||||||||||||| | | ||||||| |||||||| |||||||||||||||||||||||||||| ||||||||| |||||| |||||| || |||| |
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| T |
24995955 |
gcctaggttatagtttcgcagggcaatttcaaaaacgacatcaaatccatcaccaaagagcccaagatcgtggaaggcatttgaatctgggccaggagca |
24995856 |
T |
|
| Q |
276 |
ccatccgatccatgtgcataccacatgtgcttaaatggatcatttgccatcacaaac |
332 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
24995855 |
ccatccactccacgtgcataccacatgtgcttaaatggatcattcgacatcacaaac |
24995799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 178 - 332
Target Start/End: Complemental strand, 23682908 - 23682754
Alignment:
| Q |
178 |
ctaggttatagttttgtacggcaattgcaaaaacggcatcaaatccatcaccaaagagcccaagttcgtggaagacatttggatctggtccgggagatcc |
277 |
Q |
| |
|
||||||| |||||| || ||||| ||||||||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||| || |
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| T |
23682908 |
ctaggttgtagtttgctagggcaactgcaaaaacagcatcaaatccatcaccaatgagcccaaggtcgcggaagacatttggatctggtccaagagcacc |
23682809 |
T |
|
| Q |
278 |
atccgatccatgtgcataccacatgtgcttaaatggatcatttgccatcacaaac |
332 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| ||||||| |||||| ||||| |
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|
| T |
23682808 |
atccaatccacgtgcataccacatgtgcttaaaatgatcattcgccatctcaaac |
23682754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 178 - 332
Target Start/End: Complemental strand, 24055145 - 24054991
Alignment:
| Q |
178 |
ctaggttatagttttgtacggcaattgcaaaaacggcatcaaatccatcaccaaagagcccaagttcgtggaagacatttggatctggtccgggagatcc |
277 |
Q |
| |
|
||||||| |||||| || ||||| ||||||||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||| || |
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| T |
24055145 |
ctaggttgtagtttgctagggcaactgcaaaaacagcatcaaatccatcaccaatgagcccaaggtcgcggaagacatttggatctggtccaagagcacc |
24055046 |
T |
|
| Q |
278 |
atccgatccatgtgcataccacatgtgcttaaatggatcatttgccatcacaaac |
332 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| ||||||| |||||| ||||| |
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| T |
24055045 |
atccaatccacgtgcataccacatgtgcttaaaatgatcattcgccatctcaaac |
24054991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 23681699 - 23681586
Alignment:
| Q |
198 |
gcaattgcaaaaacggcatcaaatccatcaccaaagagcccaagttcgtggaagacatttggatctggtccgggagatccatccgatccatgtgcatacc |
297 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| ||||||| ||||||||||||| || ||||||||| |||| |||| | ||||| ||||| ||| |
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| T |
23681699 |
gcaactgcaaaaaccgcatcaaatccatcaccaattagcccaaagtcgtggaagacatctgaatctggtccaggagcaccattcaatccaagtgcaaacc |
23681600 |
T |
|
| Q |
298 |
acatgtgcttaaat |
311 |
Q |
| |
|
|||||| ||||||| |
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| T |
23681599 |
acatgttcttaaat |
23681586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 24053936 - 24053823
Alignment:
| Q |
198 |
gcaattgcaaaaacggcatcaaatccatcaccaaagagcccaagttcgtggaagacatttggatctggtccgggagatccatccgatccatgtgcatacc |
297 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| ||||||| ||||||||||||| || ||||||||| |||| |||| | ||||| ||||| ||| |
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|
| T |
24053936 |
gcaactgcaaaaaccgcatcaaatccatcaccaattagcccaaagtcgtggaagacatctgaatctggtccaggagcaccattcaatccaagtgcaaacc |
24053837 |
T |
|
| Q |
298 |
acatgtgcttaaat |
311 |
Q |
| |
|
|||||| ||||||| |
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| T |
24053836 |
acatgttcttaaat |
24053823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24757299 - 24757342
Alignment:
| Q |
1 |
tactaagttaccaacaacaaaagcagacgaaatataagttttgt |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24757299 |
tactaagttaccaacaacaaaagcagacgaaatataagttttgt |
24757342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24766296 - 24766339
Alignment:
| Q |
1 |
tactaagttaccaacaacaaaagcagacgaaatataagttttgt |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24766296 |
tactaagttaccaacaacaaaagcagacgaaatataagttttgt |
24766339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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