View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20209_high_14 (Length: 308)

Name: NF20209_high_14
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20209_high_14
NF20209_high_14
[»] chr7 (1 HSPs)
chr7 (13-308)||(39032889-39033183)


Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 39033183 - 39032889
Alignment:
Q  13 aatattactaaaatgataaaaaggagatatgatgcaatatattagctgtttgacaaattgatggccagtgattctgtggttagcctggtagtggtatcat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39033183 aatattactaaaatgataaaaaggagatatgatgcaatatattagctgtttgacaaattgatggccagtgattctgtggttagcctggtactggtatcat 39033084  T
Q  113 tcatagacaattacctcctgaggtattaaattacattttaaccatcttatttatgtaccaaattttcattaatttcagccataataacctggataacgta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  39033083 tcatagacaattacctcctgaggtattaaattacattttaaccatctta-ttatgtaccaaattttcattaatttcagcctgaataacctggataacgta 39032985  T
Q  213 ctcgtgctatcattaaaattagggcatattgctattgatagcaaagtnnnnnnnccacgaagctctcgcgaaaagaatgtcaccgttagatctaaa 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||    
T  39032984 ctcgtgctatcattaaaattagggcatattgctattgatagcaaagtaaaaaaaccacgaagctctcacgaaaagaatgtcaccgttagatctaaa 39032889  T

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