View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20209_low_1 (Length: 967)

Name: NF20209_low_1
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20209_low_1
NF20209_low_1
[»] chr8 (6 HSPs)
chr8 (2-961)||(14003254-14004212)
chr8 (1-961)||(5766591-5767553)
chr8 (15-145)||(18314638-18314768)
chr8 (626-671)||(17627610-17627655)
chr8 (13-71)||(17635654-17635712)
chr8 (105-142)||(17643025-17643062)
[»] chr4 (10 HSPs)
chr4 (199-320)||(1481511-1481632)
chr4 (7-142)||(8186351-8186486)
chr4 (520-651)||(641449-641580)
chr4 (201-316)||(8186539-8186654)
chr4 (627-705)||(547382-547460)
chr4 (625-723)||(55908278-55908376)
chr4 (502-562)||(1601013-1601073)
chr4 (205-267)||(532630-532692)
chr4 (194-248)||(7225324-7225378)
chr4 (523-648)||(3438101-3438226)
[»] chr1 (2 HSPs)
chr1 (631-705)||(19468064-19468138)
chr1 (199-244)||(19467627-19467672)
[»] chr5 (2 HSPs)
chr5 (505-732)||(38266985-38267213)
chr5 (39-142)||(29021726-29021829)
[»] scaffold0262 (1 HSPs)
scaffold0262 (631-701)||(390-460)
[»] chr2 (1 HSPs)
chr2 (625-723)||(1037214-1037312)
[»] chr6 (1 HSPs)
chr6 (13-121)||(6403528-6403636)


Alignment Details
Target: chr8 (Bit Score: 912; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 912; E-Value: 0
Query Start/End: Original strand, 2 - 961
Target Start/End: Complemental strand, 14004212 - 14003254
Alignment:
Q  2 catccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctc 101  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004212 catccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctc 14004113  T
Q  102 catctcattgctgattgttttcctttgctagaagaactcgacctcgcttacccctctaaaatcattaatcacacacgtgctaccttctccactggactag 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14004112 catctcattgctgattgttttcctttgctagaagaactcgacctcgcttacccctctaaaatcattaatcacacacatgctaccttctccactggactag 14004013  T
Q  202 aggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactgcaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004012 aggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactgcaa 14003913  T
Q  302 gtttctccaagaggtcatcttgcttagatgtgaacaattaaccgtcgcaggcattgatcttgctctccgccagaaaccaacattgacttctttatccatt 401  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  14003912 gtttctccaagatgtcatcttgcttagatgtgaacaattaaccgtcgcaggcgttgatcttgctctccgccagagaccaacattgacttctttatccatt 14003813  T
Q  402 acaggtactgttactactggtttggaacatcttacctcacatttcatcgactccttgttgagtttgaagggatttgacttctcttcttttgacgggattt 501  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14003812 acaggtactgttactactggtttggaatatcttacctcacatttcatcgactccttgttgagtttgaagggatt-gacttctcttcttttgacgggattt 14003714  T
Q  502 cgtatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatct 601  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003713 catatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatct 14003614  T
Q  602 catttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttgg 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14003613 catttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgctgctgagttgtctttgtttcttgg 14003514  T
Q  702 tgatctgctctctatcaaccttggtaattgtcgcttgcgcagagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaatatg 801  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003513 tgatctgctctctatcaaccttggtaattgtcgcttgctcacagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaatatg 14003414  T
Q  802 aatcgcacaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagcacttgtttac 901  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003413 aatcgcacaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagcacttgtttac 14003314  T
Q  902 aagatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca 961  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003313 aagatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca 14003254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 866; E-Value: 0
Query Start/End: Original strand, 1 - 961
Target Start/End: Original strand, 5766591 - 5767553
Alignment:
Q  1 tcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatct 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  5766591 tcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaaccttatttctcttaatagcactgatat 5766690  T
Q  101 ccatctcattgctgattgttttcctttgctagaagaactcgacctcgcttacccctctaaaatcattaatcacacacgtgctaccttctccactggacta 200  Q
    ||| ||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5766691 ccacctcattgctgatacttttcctttgctagaagaacttgacctcgcttacccctctaaaatcattaatcacacacatgctaccttctccactggacta 5766790  T
Q  201 gaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactgca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766791 gaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactgca 5766890  T
Q  301 agtttctccaagaggtcatcttgcttagatgtgaacaattaaccgtcgcaggcattgatcttgctctccgccagaaaccaacattgacttctttatccat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  5766891 agtttctccaagaggtcatcttgcttagatgtgaacaattaaccatcgcaggcgttgatcttgctctcctccagaaaccaacattgacttctttatccat 5766990  T
Q  401 tacaggtactgttactactggtttggaacatcttacctcacatttcatcgactccttgttgagtttgaagggatttgacttctcttcttttgacgggatt 500  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5766991 tacatgtactgttactactggtttggaacatcttacctcacatttcatcgactccttgttgagtttgaaggga-ttgacttctcttcttttgacgggatt 5767089  T
Q  501 tcgtatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatc 600  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767090 tcgtatctcagatcaatttctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatc 5767189  T
Q  601 tcatttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttg 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767190 tcatttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatactgattttttgaatgatcattgtgttgctgagttgtctttgtttcttg 5767289  T
Q  701 gtgatctgctctctatcaaccttggtaattgtcgcttgcgcagagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaatat 800  Q
    |||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767290 gtgatctgctctctctcaaccttggtaattgtcgcttgctcacagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaatat 5767389  T
Q  801 gaatcgcacaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctag---cacttgt 897  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | |||||    
T  5767390 gaatcgcacaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagcgccgcttgt 5767489  T
Q  898 ttacaagatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca 961  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767490 ttagaagatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca 5767553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 18314638 - 18314768
Alignment:
Q  15 aatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgctg 114  Q
    ||||| || |||| ||||||||  || ||||||||||||||||||||    |||||  || || | |||||  || |||||||||||   ||||||||||    
T  18314638 aatggcttacgagttttctctcaaaatattacaactttgacctcactctcatgttcttacattcaatctctccatggcactgatctcttcctcattgctg 18314737  T
Q  115 attgttttcctttgctagaagaactcgacct 145  Q
    ||||||| |||||||| ||||||||||||||    
T  18314738 attgtttccctttgctcgaagaactcgacct 18314768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 626 - 671
Target Start/End: Original strand, 17627610 - 17627655
Alignment:
Q  626 gtatccaacatttggatcttcaatatgctgattttttgaatgatca 671  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||    
T  17627610 gtatccaacatttggatcttcagtatgcttattttttgaataatca 17627655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 17635654 - 17635712
Alignment:
Q  13 ctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttcc 71  Q
    ||||||| || ||||||||||| ||||| ||||||||||||||||| || | |||||||    
T  17635654 ctaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgttcc 17635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 17643025 - 17643062
Alignment:
Q  105 ctcattgctgattgttttcctttgctagaagaactcga 142  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  17643025 ctcatcgctgattgtttccctttgctagaagaactcga 17643062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 5e-31; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 199 - 320
Target Start/End: Complemental strand, 1481632 - 1481511
Alignment:
Q  199 tagaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactg 298  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||  |||| |||||| || |||||||| ||| ||||||||||||||    
T  1481632 tagaggctctttcattggcactcttcaaactccgcaagcttaatctctctgatcattactacgtcaacgacattttgctttttcaattgttcaagaactg 1481533  T
Q  299 caagtttctccaagaggtcatc 320  Q
    |||||||||| || ||||||||    
T  1481532 caagtttctcgaaaaggtcatc 1481511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 8186351 - 8186486
Alignment:
Q  7 ttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatct 106  Q
    ||||||| ||||| ||||||| | |||| || || |||||||||||||||||||| |  ||||||||| || | ||| | |||||||||||  ||   ||    
T  8186351 ttcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacatgttccaacattgaatctatcaatagcactgacatcttcct 8186450  T
Q  107 cattgctgattgttttcctttgctagaagaactcga 142  Q
    ||| || |||||||||||||| ||||||||||||||    
T  8186451 catcgccgattgttttcctttcctagaagaactcga 8186486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 520 - 651
Target Start/End: Complemental strand, 641580 - 641449
Alignment:
Q  520 ctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagt 619  Q
    |||||||| ||||||||| || | |||||||||| ||| ||||| ||| || ||||| |||| |||||||||  ||||||||  | ||||||||| |||     
T  641580 ctctcctctattgcaatgaaaggccttcctttgacgagacttgtcctctgcaattgcaccggctatacttatgatggaatcttgtgtttgttatccaaga 641481  T
Q  620 cgaaacgtatccaacatttggatcttcaatat 651  Q
      ||| || | |||||| ||||||||||||||    
T  641480 gtaaatgtttacaacatctggatcttcaatat 641449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 8186539 - 8186654
Alignment:
Q  201 gaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactgca 300  Q
    |||||||||||||| |||||  ||||||| |||||||||||||| ||| |||||  |||  |||||| ||  ||||||| ||||||||| ||||| || |    
T  8186539 gaggctctttcattggcacttttcaaacttcgcaaggttaatctatctaatcataactatatcaacgacaaattgctttttcacttgttaaagaattgta 8186638  T
Q  301 agtttctccaagaggt 316  Q
    ||  |||| |||||||    
T  8186639 agcatctcgaagaggt 8186654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 627 - 705
Target Start/End: Complemental strand, 547460 - 547382
Alignment:
Q  627 tatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgat 705  Q
    |||||||||||| ||||||||| |||||| |||||||| | ||||   ||||  ||| |||||||||||||||||||||    
T  547460 tatccaacatttagatcttcaaaatgctgtttttttgactaatcaacatgttcttgacttgtctttgtttcttggtgat 547382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 625 - 723
Target Start/End: Original strand, 55908278 - 55908376
Alignment:
Q  625 cgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaacctt 723  Q
    ||||| |||||||||||||||||| ||||    ||| ||||||||||   ||| || |||||||||||||||||||||||| || | ||||| ||||||    
T  55908278 cgtatacaacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaacctt 55908376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 502 - 562
Target Start/End: Complemental strand, 1601073 - 1601013
Alignment:
Q  502 cgtatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttg 562  Q
    |||||||| ||||| || |||||||| ||||||| ||||| || |||||||||||||||||    
T  1601073 cgtatctcggatcagttgctctcctctattgcaaaggaaaatcctcctttgaggaggcttg 1601013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 532692 - 532630
Alignment:
Q  205 ctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacg 267  Q
    ||||||||||| ||||  |||||||||||||||||||||| |||  ||||| |||| ||||||    
T  532692 ctctttcattatcacttttcaaactccgcaaggttaatctttctactcatgactacatcaacg 532630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 7225324 - 7225378
Alignment:
Q  194 tggactagaggctctttcattagcactcatcaaactccgcaaggttaatctctct 248  Q
    |||| ||||||||||||||| ||||||  |||||||||| | |||||||||||||    
T  7225324 tggagtagaggctctttcatcagcacttttcaaactccgtagggttaatctctct 7225378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 648
Target Start/End: Original strand, 3438101 - 3438226
Alignment:
Q  523 tcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagtcga 622  Q
    ||||| |||||||| | | ||||||||||||| |||||||| |||  | ||||| |||| |||| |||| ||| |||||  | | ||||||| ||||       
T  3438101 tcctctattgcaattggaggtcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatcttttctctgttatccaagtgtc 3438200  T
Q  623 aacgtatccaacatttggatcttcaa 648  Q
    || |||| ||||||||||||||||||    
T  3438201 aatgtatacaacatttggatcttcaa 3438226  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 631 - 705
Target Start/End: Original strand, 19468064 - 19468138
Alignment:
Q  631 caacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgat 705  Q
    ||||||||||||||||||  |||||  |||||||||||||| | ||||| | |||||||||||||||||||||||    
T  19468064 caacatttggatcttcaacgtgctgggtttttgaatgatcactatgttgataagttgtctttgtttcttggtgat 19468138  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 19467627 - 19467672
Alignment:
Q  199 tagaggctctttcattagcactcatcaaactccgcaaggttaatct 244  Q
    |||||||||||||| | |||||  ||||||||||||||||||||||    
T  19467627 tagaggctctttcacttgcacttctcaaactccgcaaggttaatct 19467672  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 732
Target Start/End: Original strand, 38266985 - 38267213
Alignment:
Q  505 atctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatc-tca 603  Q
    ||||| ||||| ||||| ||||| ||||||||| ||||||||||||||| ||| ||||  ||| | |||||| |||| || ||||  ||||||||| |      
T  38266985 atctccgatcacttcctttcctctattgcaatgcaaagtcttcctttgacgagccttggcctcggatattgcaccggctacactttctctggaatcttgc 38267084  T
Q  604 tttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtg 703  Q
    ||||| |||||  | |    |||||| ||||||||||| |||||| |  |||||||| | | ||||||   |||||| ||||||||||||||||||  |     
T  38267085 ttttttttatcctactgtccacgtatacaacatttggaccttcaagaaactgattttctcactgatcaccatgttgccgagttgtctttgtttcttcctc 38267184  T
Q  704 atctgctctctatcaaccttggtaattgt 732  Q
    ||||| | ||||| |||||| || |||||    
T  38267185 atctggtgtctataaaccttagttattgt 38267213  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 29021829 - 29021726
Alignment:
Q  39 aacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgctgattgttttcctttgctagaagaac 138  Q
    |||||||| ||||||||||| || | ||||| | ||||| |  | || ||||||||| |||||  ||| ||||||||||| || |||||||| |||||||    
T  29021829 aacattactactttgacctctctcacttgttaccaccttgaaaccctcaatagcactcatctctttcttattgctgattgcttccctttgctcgaagaac 29021730  T
Q  139 tcga 142  Q
    ||||    
T  29021729 tcga 29021726  T

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Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 631 - 701
Target Start/End: Complemental strand, 460 - 390
Alignment:
Q  631 caacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttgg 701  Q
    |||||||||||||||||| ||||    ||| |||||||||||  |||||| ||||||||||||||||||||    
T  460 caacatttggatcttcaaaatgccatgtttatgaatgatcatgatgttgcagagttgtctttgtttcttgg 390  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 625 - 723
Target Start/End: Original strand, 1037214 - 1037312
Alignment:
Q  625 cgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaacctt 723  Q
    ||||| |||||||||||||||||| ||||    ||| ||||||||||   ||| || |||||||||||||||||||||||| || | ||||| ||||||    
T  1037214 cgtatacaacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaacctt 1037312  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 6403636 - 6403528
Alignment:
Q  13 ctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgc 112  Q
    ||||||| |||||||||||||| || ||  | || ||||||||||| |||  ||||||| || || |||||||||||||| || |||||   ||||||||    
T  6403636 ctaatgggttgcgagctttctcccgaaaggtcactactttgacctctcttgattgttccgacattgattctcttaatagctctcatctcttactcattgc 6403537  T
Q  113 tgattgttt 121  Q
     ||||||||    
T  6403536 cgattgttt 6403528  T

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