View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20209_low_10 (Length: 425)
Name: NF20209_low_10
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 85 - 409
Target Start/End: Complemental strand, 39538035 - 39537711
Alignment:
| Q |
85 |
aaaagtggaatacaaacaattatagctatcccaatgagattctggtgctatgtttatgaactctttttcacttttattcaatgtagtagtcacaaagttt |
184 |
Q |
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| T |
39538035 |
aaaagtggaatacaaacaattatagctatcccaatgagattctggtgctatgcttatgaactctttttcacttttattcaatgtagtagtcacaaagttt |
39537936 |
T |
|
| Q |
185 |
gattaaaatgtaaccaaattttaaccttcaaaacttgaagttagtggaaccaaatatgttttgcctatgcaaaaagcacctggttgttgcccttgtagcc |
284 |
Q |
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| T |
39537935 |
gattaaaatgtaaccaaattttaaccttcaaaacttgaagttagtggaaccaaatatgttttgcctatgcaaaaagcacctggttgatgcccttgtagcc |
39537836 |
T |
|
| Q |
285 |
accaattgcaaagggtctccatggcaaggggtctgcaaccctaccaattcatagatcagtaacaagaaaacaaatnnnnnnnttagcagttctgcccaag |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39537835 |
accaattgcaaagggtctccatggcaaggggtctgcaaccctaccaattcatagatcagtaacaagaaaacaaataaaaaaattagcagttctgcccaag |
39537736 |
T |
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| Q |
385 |
atactaaacttttcatatttaaaat |
409 |
Q |
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|||||| |||||||||||||||||| |
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| T |
39537735 |
atactacacttttcatatttaaaat |
39537711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 2627554 - 2627480
Alignment:
| Q |
168 |
tagtagtcacaaagtttgattaaaatgtaaccaaattttaaccttcaaaacttgaagttagtggaaccaaatatg |
242 |
Q |
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|||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
2627554 |
tagtagtcacaacatttcattaaaaattaaccaaattttaaccttcaaaatttgaagttagtagaaccaaatatg |
2627480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 295
Target Start/End: Original strand, 2557925 - 2558034
Alignment:
| Q |
186 |
attaaaatgtaaccaaattttaaccttcaaaacttgaagttagtggaaccaaatatgttttgcctatgcaaaaagcacctggttgttgcccttgtagcca |
285 |
Q |
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||||||| ||||||||||||||| |||||||||| |||||||| ||||||| ||| |||| || ||||||| ||||| | | |||||||||| ||| |
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| T |
2557925 |
attaaaaactaaccaaattttaacattcaaaacttaaagttagtagaaccaattataatttgattaagcaaaaattacctgttagatgcccttgtaacca |
2558024 |
T |
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| Q |
286 |
ccaattgcaa |
295 |
Q |
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||| |||||| |
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| T |
2558025 |
ccatttgcaa |
2558034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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