View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20209_low_11 (Length: 418)
Name: NF20209_low_11
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 38 - 401
Target Start/End: Complemental strand, 36329222 - 36328855
Alignment:
| Q |
38 |
ttttgttgaaaaagatgaaattcttggtcttaaattacctagtaccagcaaagaaactttcattcccccatgtttgtgtctcacagctcttcttcctctc |
137 |
Q |
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| T |
36329222 |
ttttgttgaaaaagatgaaattcttggtcttaaattacctagtacgagcaaagaaactttcattcccccatgtttgtgtctcacagctcttcttcctctc |
36329123 |
T |
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| Q |
138 |
caatcaacttttccatcaactaactcttcttcctgcatgcatgcatggacatacataatattaataattaa----gtagcttgtaagaaattaacactag |
233 |
Q |
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| T |
36329122 |
caatcaacttttccatcaactaactcttcttcctgcatgcatgcatggacatacataatattaataattaattaagtagcttgtaagaaattaacactag |
36329023 |
T |
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| Q |
234 |
tacaaaattaagttaatgattcaactttttcaaaattagaaaccaattatatatttgtctgtctctaatttttgttgtgattcaactttttctaatagtt |
333 |
Q |
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| T |
36329022 |
tacaaaattaagttgatgattcaactttttcaaaattagaaaccaattatatatttgcctgtctctaatttttgttgtgattcaactttttctaatagtt |
36328923 |
T |
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| Q |
334 |
taaaacaagaatgtacataaacaacgaagagtaccattgttcttgagaaaagaaagagaggaacaagt |
401 |
Q |
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| T |
36328922 |
taaaacaagaatgtacataaacaacgaagagtaccattgttcttgagaaaagaaagagaggaacaagt |
36328855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 68 - 227
Target Start/End: Complemental strand, 36322328 - 36322173
Alignment:
| Q |
68 |
taaattacctagtaccagcaaagaaactttcattcccccatgtttgtgtctcacagctcttcttcctctccaatcaacttttccatcaactaactcttct |
167 |
Q |
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| T |
36322328 |
taaagtacctagtatgaccaaagaaactttcattcccccatgtttatgtctcacagctcttcttcctttccaatcaacttttccatcaactagctcttct |
36322229 |
T |
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| Q |
168 |
tcctgcatgcatgcatggacatacataatattaataattaagtagcttgtaagaaattaa |
227 |
Q |
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| T |
36322228 |
tcctg----catgtatggacatacataatattaatgattaagtagcatgtaaaaaattaa |
36322173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 384
Target Start/End: Complemental strand, 36322012 - 36321970
Alignment:
| Q |
342 |
gaatgtacataaacaacgaagagtaccattgttcttgagaaaa |
384 |
Q |
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| T |
36322012 |
gaatgtacataaacaatgaaaagtaccattgttcttgagaaaa |
36321970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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