View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20209_low_12 (Length: 386)
Name: NF20209_low_12
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 161 - 372
Target Start/End: Complemental strand, 10014286 - 10014075
Alignment:
| Q |
161 |
aaaccactgtacttgaggtcgtagatcaggtgtattagaatttcaagtcaatgaatagaaatgaattaagttctaaatattataatcatattataatgac |
260 |
Q |
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| T |
10014286 |
aaacaactgtacttgaggtcgtagatcaggtgtattagaatttcaagtcaatgaattgaaatgaattaagttctaaatattataatcatattataatgac |
10014187 |
T |
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| Q |
261 |
atcaggatcatgtctaaaggtacacaatatcggaatcgaagattagaagttggaaaatgaaacaatcaagagcttcaaatttggggtgtaatgaaccaca |
360 |
Q |
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| T |
10014186 |
atcaggatcaggtctaaaggtacacaatatcggaatcgaagattagaagttggaaaatgaaacaatcaagagcttcaaatttggggtgtaatgaaccaca |
10014087 |
T |
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| Q |
361 |
agatatgcttca |
372 |
Q |
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|||||||||||| |
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| T |
10014086 |
agatatgcttca |
10014075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 10014515 - 10014350
Alignment:
| Q |
1 |
tctcatgagaactaatatattaaagaacaagatgaccattgatccatgtcaatcttaggaactcaattcttaaataaaaagaaacttcatgatagacata |
100 |
Q |
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| T |
10014515 |
tctcatgagaactaatatattaaagaacaagatgaccattgatccatgtcaatcttaggaactcaattcttaaataaaaaggaacttcatgatagacata |
10014416 |
T |
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| Q |
101 |
agatgcacgaatgcatatcatcaaatcaaaatagtaggttagaagcactttagaatgtctaaacca |
166 |
Q |
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| T |
10014415 |
agatgcactaatgcatatcatcaaatcgaaatagtaggttagaagcactttagaatgtctaaacca |
10014350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 20421314 - 20421148
Alignment:
| Q |
1 |
tctcatgagaactaatatattaaagaacaagat-gaccattgatccatgtcaatcttaggaactcaattcttaaataaaaagaaacttcatgatagacat |
99 |
Q |
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| T |
20421314 |
tctcataagaactaaaatattatagaacaagattgaccaatgatccatgtcaatctaaggaacacaattcttaaattaaaaggaacttcatgatatacat |
20421215 |
T |
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| Q |
100 |
aagatgcacgaatgcatatcatcaaatcaaaatagtaggttagaagcactttagaatgtctaaacca |
166 |
Q |
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| T |
20421214 |
aagaagcacaaatgcatgtcatcaaatcaaaattgtaggttagaagcactttagaatgtctaaacca |
20421148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 161 - 372
Target Start/End: Complemental strand, 20421072 - 20420844
Alignment:
| Q |
161 |
aaaccactgtacttgaggtcgtagatcaggtgtattagaatttcaagtcaatgaatagaaatgaattaagttctaaatattataatcatattataatgac |
260 |
Q |
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| T |
20421072 |
aaacaactgtatttgaggtcgtagatcaggtgtatcagaatttcaagtcaacggataccaatgattgaaattctaaatattataagcatattataatgac |
20420973 |
T |
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| Q |
261 |
atcaggatcat--------------gtctaaaggtacacaa---tatcggaatcgaagattagaagttggaaaatgaaacaatcaagagcttcaaatttg |
343 |
Q |
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| T |
20420972 |
atcagaagcaatatatcagaaacacgtctaaagatacataagaatatcagaatcaaagatcagaagttggaaaatggaacattcaaaagcttcaaatttg |
20420873 |
T |
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| Q |
344 |
gggtgtaatgaaccacaagatatgcttca |
372 |
Q |
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| T |
20420872 |
gggtgtaatgaaccacaagatatgcttca |
20420844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 321 - 373
Target Start/End: Complemental strand, 10038489 - 10038437
Alignment:
| Q |
321 |
aacaatcaagagcttcaaatttggggtgtaatgaaccacaagatatgcttcat |
373 |
Q |
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| T |
10038489 |
aacactcaagagcttcaaatttggggtgtattgaaccacaagatctgcatcat |
10038437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 20288949 - 20289000
Alignment:
| Q |
321 |
aacaatcaagagcttcaaatttggggtgtaatgaaccacaagatatgcttca |
372 |
Q |
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| T |
20288949 |
aacactcaagagcttcaaatttggagtgtattgaaccataagatctgcttca |
20289000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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