View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20209_low_14 (Length: 356)
Name: NF20209_low_14
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 3307226 - 3307577
Alignment:
| Q |
1 |
aaaaaacaaagtataaatgcttcaattgtcacaagaccaataacttcaagaataattgtcacaagaaaggggaaaaaaggattccgttcaagatgagatt |
100 |
Q |
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| T |
3307226 |
aaaaaacaaagtataaatgcttcaattgtcacaagaccaataacttcaagaataattgtcacaagaaaggggaaaaaaggattccgttcaagatgagatt |
3307325 |
T |
|
| Q |
101 |
acctcggaggaggattatgagagtgcgggtagtggtggtgacaagttgggaaaccaaaaatgagttaggtcatggtatgtagatgctcttatcacatgtg |
200 |
Q |
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| T |
3307326 |
gcctcggaggaggattatgagagtgtgggtagtggtggtgacaagttgggaaaccaaaaatgagttaggtcatggtatgtagatgctcttatcacatgtg |
3307425 |
T |
|
| Q |
201 |
tccaagnnnnnnnnntgagactttggagttgaaagaaggtggactcgttcacttagaaataacacaaagtgcaaggttcaagttatgagttcaatttgtc |
300 |
Q |
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|||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
3307426 |
tccaggaaaaaaaatagagactttggagttgaaagaaggtggactcgttcacttagaaataacacagagtgcaaggttcaagttatgagtttaatttgtc |
3307525 |
T |
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| Q |
301 |
ttaggatttttgacaaccttaaattcctattacaaattggcataggtgaatg |
352 |
Q |
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| T |
3307526 |
ttaggatttttgacaaccttaaattcctattacaaattggcataggtgaatg |
3307577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 16549593 - 16549635
Alignment:
| Q |
9 |
aagtataaatgcttcaattgtcacaagaccaataacttcaaga |
51 |
Q |
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| T |
16549593 |
aagtacaaatgcttcaattgtcacaagaccaatcacttcaaga |
16549635 |
T |
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