View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20209_low_15 (Length: 311)
Name: NF20209_low_15
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_low_15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 44 - 311
Target Start/End: Original strand, 5061888 - 5062159
Alignment:
| Q |
44 |
tacaaagcgactaaacaaaatgaaagtggtaaatgtgcattgatgaccatgctctaaatagtatgccaactcaagattccctccnnnnnnn-gtatacca |
142 |
Q |
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| T |
5061888 |
tacaaagcgattaaacaaaatgaaagtagtaaatatgcattgatgaccatgctctaaatagtatgccaactcaagattccctccaaaaaaaagtattcca |
5061987 |
T |
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| Q |
143 |
actcaagatggtatgaccatgttagatgaatggtaaaaactaactctattggagagctaaaattgccaaactataggatggaattgtcaaacaaaaactt |
242 |
Q |
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| T |
5061988 |
actcaagatggtatgaccatgttagatgaatggtaaaaactaactctattggagagcttaaattgccaaactataggatggaattgtcaaacaaaaactt |
5062087 |
T |
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| Q |
243 |
ttaggtgta---tagtatttaaaggagttttaatacttcctccgtcccaaattatactatattttgatcatt |
311 |
Q |
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| T |
5062088 |
ttaggtgtatagtagtatttaggggagttttagtactccctccgtcctaaattatactacattttcatcatt |
5062159 |
T |
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