View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20209_low_17 (Length: 307)
Name: NF20209_low_17
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 2795549 - 2795269
Alignment:
| Q |
17 |
atgatcaacacgcaagaaccgtgccacgtcttcaaaattagggagtgtagcagacaatcccaccaaccgaatatagtccttcgttgtttcaatctgcctg |
116 |
Q |
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| T |
2795549 |
atgatcaacacgcaagaaccgcgccacgtcttcaaaattagggagtgtagcagacaatcccaccaaccgaatatagtccttcgttgtttcaatctgcctg |
2795450 |
T |
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| Q |
117 |
actgttctagcaatgatactttcaagaacaggccctctgttatcatgaagaagatgaatctcatcaatgataagaagcttcacaagctgagtataaattc |
216 |
Q |
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| T |
2795449 |
actgttctagcaatgatactttcaagaacaggccctctgttatcatgaagaagatgaatctcatcaatgataagaagcttcacaagctgagtataaattc |
2795350 |
T |
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| Q |
217 |
gatcacccgactttcgtgtaataatatcccacttctcaggagttgtgacaataatttgagtctcttccatctgtttctgtg |
297 |
Q |
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| T |
2795349 |
gatcacccgactttcgtgtaataatatcccacttctcaggagttgtgacaataatttgagtctcttccatctgtttctgtg |
2795269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 29263060 - 29262790
Alignment:
| Q |
19 |
gatcaacacgcaagaaccgtgccacgtcttcaaaattagggagtgtagcagacaatcccaccaaccgaatatagtccttcgttgtttcaatctgcctgac |
118 |
Q |
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|||||||||||| |||| ||||||| |||||| |||||||||| ||||| |||||||||||||| |||||||| ||||| | ||||||||||||||| || |
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| T |
29263060 |
gatcaacacgcaggaacagtgccacatcttcataattagggagagtagccgacaatcccaccaaacgaatataatccttagatgtttcaatctgcctaac |
29262961 |
T |
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| Q |
119 |
tgttctagcaatgatactttcaagaacaggccctctgttatcatgaagaagatgaatctcatcaatgataagaagcttcacaagctgagtataaattcga |
218 |
Q |
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| T |
29262960 |
tgttctagcaacaatactttcaagaacaggccctctgttatcatgaaggagatgaatttcatcaatgatgacaagcttcacaagctgcgtataagttcga |
29262861 |
T |
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| Q |
219 |
tcacccgactttcgtgtaataatatcccacttctcaggagttgtgacaataatttgagtctcttccatctg |
289 |
Q |
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| T |
29262860 |
tctcccgactttcgggtgataatatcccacttctcaggagttgtcacaataatttgagtctcttcgatctg |
29262790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 29189353 - 29189413
Alignment:
| Q |
231 |
cgtgtaataatatcccacttctcaggagttgtgacaataatttgagtctcttccatctgtt |
291 |
Q |
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| T |
29189353 |
cgtgtaataatgtctcatttctcaggagttgtcaccataatctgactctcttctatctgtt |
29189413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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