View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20209_low_18 (Length: 297)
Name: NF20209_low_18
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 48889363 - 48889637
Alignment:
| Q |
17 |
cataagacaactgatgctttattttgttattatgaaatctttgggtcggggctacatttggagtgtaatgtgtttgactgacttctttttcatgatgaac |
116 |
Q |
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| T |
48889363 |
cataagacaactgatgctttattttgttattatgaaatctttgggtcggggctacatttggagtgtaatgtgtttgactgacttctttttcatgatgagc |
48889462 |
T |
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| Q |
117 |
tgatgtaatatgtcatgaaatatttagttgttaactctttgtagtttgttaattgaaaatattgacagctttgtttgtgcgattcaccattatgtactat |
216 |
Q |
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| T |
48889463 |
tgatgtaatatgtcatgaaatatttagttgttaactctttgtagtttgttaattgaaaatattgacagctttgtttgtgcgattcaccattatgtactat |
48889562 |
T |
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| Q |
217 |
catttcaatcaccatgtgttttcataagataagattaggggtgatcacatgttcagcttcctgtagaataatcta |
291 |
Q |
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| T |
48889563 |
catttcaatcaccatgtgttttcataagataagattaggggtgatcacatgttcagcttcctgtaggataatcta |
48889637 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 15350172 - 15350218
Alignment:
| Q |
200 |
tcaccattatgtactatcatttcaatcaccatgtgttttcataagat |
246 |
Q |
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| T |
15350172 |
tcaccattatgcactataatttcaatcaccatgtgttttcataagat |
15350218 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 48884652 - 48884731
Alignment:
| Q |
123 |
aatatgtcatgaaatatttagttgttaactctttgtagtttgttaattgaaaatattgacagctttgtttgtgcgattca |
202 |
Q |
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| T |
48884652 |
aatatgacatgaaatgtttagtggttaattatttttaatttggttattggaaatattgacagctttgttagtgcgattca |
48884731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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