View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20209_low_19 (Length: 288)
Name: NF20209_low_19
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 13781743 - 13781955
Alignment:
| Q |
1 |
tcatattatgaacaaatcatgttcataaatctgaccatacaacatgcatattttgacgacactaaaatttgaagttcgacaatactattgattttagtca |
100 |
Q |
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| T |
13781743 |
tcatattatgaacaaatcctgttcataaatctgaccatacagtatatatattttgactacactaaaatttgaagttcgacaatactattgattttagtct |
13781842 |
T |
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| Q |
101 |
atacaaaaacacaatagaaccagtaaaaaattgcataacataacccgtaaactaccgaaaaactcacatccacgtctgacaccaagaatgcttgaaccaa |
200 |
Q |
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| T |
13781843 |
atacaaaaacacaatagaaccagtaaaaaattgcataacataacccgtaaactaccgaaaaactcaaatccacgtctgacaccaagaatgcttgaaccaa |
13781942 |
T |
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| Q |
201 |
tagaatgcatgct |
213 |
Q |
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|||||||||||| |
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| T |
13781943 |
cagaatgcatgct |
13781955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 13781694 - 13781747
Alignment:
| Q |
89 |
tgattttagtcaatacaaaaacacaatagaaccagtaaaaaattgcataacata |
142 |
Q |
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|||||||| || ||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
13781694 |
tgattttaatctatacacaaacacaatagaaccagtaaaaaattgcatatcata |
13781747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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