View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20209_low_20 (Length: 250)
Name: NF20209_low_20
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_low_20 |
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| [»] chr3 (5 HSPs) |
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| [»] scaffold1067 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 27632228 - 27632458
Alignment:
| Q |
20 |
ttgtgtataggaagatacttttcgtaaaccttgtttcaataactaatttgaaaaaacactacaatataccttattaatgtgtataaagtactcaaaatca |
119 |
Q |
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| T |
27632228 |
ttgtgtataggaagatacttttcgtaaaccttgtttcaataactaatttgaaaaaacactacaatataccttattaatgtgtataaagtactcaaaatca |
27632327 |
T |
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| Q |
120 |
atgcagaaaatagttaatagagaatgtttggaatgtattacaggttaccgctttagaattcagatattgctagaattaaataaacatgttctaagagatg |
219 |
Q |
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| T |
27632328 |
atgcagaaaatagttaatagagaatgtttggaatgtattacaggtaaccgctttagaattcagatattgctagaaataaataaacatgttctaagagacg |
27632427 |
T |
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| Q |
220 |
aagagtatagactgcaaaggatcataccttt |
250 |
Q |
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| T |
27632428 |
aagagtatagactgcaaaggatcataccttt |
27632458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 34516270 - 34516482
Alignment:
| Q |
20 |
ttgtgtataggaagatacttttcgtaaaccttgtttcaataactaatttgaaaaaacactacaatataccttattaatgtgtataaagtactcaaaatca |
119 |
Q |
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| T |
34516270 |
ttgtgtataggaagatacttttcttaaaccttgtttcagtaactaatttgaaaaaacactacaccataccttattaatgtgtataaagtactcaaaatca |
34516369 |
T |
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| Q |
120 |
atgcagaaaatagttaatagagaatgtttggaatgtattacaggttaccgctttagaattcagatattgctagaattaaataaacatgttctaagagatg |
219 |
Q |
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| T |
34516370 |
atgcagaaaatagttaatagagaatgtttggaatgtattacaggttaccgctttagaattcagatattgctagaaataaataaacttgttctaagagacg |
34516469 |
T |
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| Q |
220 |
aagagtatagact |
232 |
Q |
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| T |
34516470 |
aagagtatagact |
34516482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 34525531 - 34525633
Alignment:
| Q |
85 |
ataccttattaatgtgtataaagtactcaaaatcaatgcagaaaatagttaatagagaatgtttggaatgtattacaggttaccgctttagaattcagat |
184 |
Q |
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| T |
34525531 |
ataccttattaatgtgtataaagtactcaaaatcaatacaacaaatatttaaaagagaatgtttggaatgtattacaggttaccactttagaattcaaat |
34525630 |
T |
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| Q |
185 |
att |
187 |
Q |
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| T |
34525631 |
att |
34525633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 34378017 - 34377964
Alignment:
| Q |
28 |
aggaagatacttttcgtaaaccttgtttcaataactaatttgaaaaaacactaca |
82 |
Q |
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| T |
34378017 |
aggaagatatttttcataa-ccttatttcaataactaatttgaaaaaatactaca |
34377964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 34373500 - 34373448
Alignment:
| Q |
22 |
gtgtataggaagatacttttcgtaaa-ccttgtttcaataactaatttgaaaa |
73 |
Q |
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| T |
34373500 |
gtgtttaggaagatacttttcataaaaccttatttcaacaactaatttgaaaa |
34373448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 15741755 - 15741696
Alignment:
| Q |
21 |
tgtgtataggaagatacttttcgtaaaccttgtttcaataactaatttgaaaaaacacta |
80 |
Q |
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| T |
15741755 |
tgtgtttaggaagatacttttcataaaccttatttcaataactaatttcaaaaaacacta |
15741696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 1574621 - 1574680
Alignment:
| Q |
21 |
tgtgtataggaagatacttttcgtaaaccttgtttcaataactaatttgaaaaaacacta |
80 |
Q |
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| T |
1574621 |
tgtgtttaggaagatacttttcataaaccttatttcaataactaatttcaaaaaacacta |
1574680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 10532621 - 10532680
Alignment:
| Q |
21 |
tgtgtataggaagatacttttcgtaaaccttgtttcaataactaatttgaaaaaacacta |
80 |
Q |
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| T |
10532621 |
tgtgtttaggaagatacttttcataaatcttatttcaataattaatttgaaaaaacacta |
10532680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1067 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1067
Description:
Target: scaffold1067; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 2379 - 2432
Alignment:
| Q |
27 |
taggaagatacttttcgtaaaccttgtttcaataactaatttgaaaaaacacta |
80 |
Q |
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|||||| ||||||||| |||||||| |||||||||||||||| ||||||||||| |
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| T |
2379 |
taggaaaatacttttcataaaccttatttcaataactaatttcaaaaaacacta |
2432 |
T |
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