View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20209_low_24 (Length: 210)
Name: NF20209_low_24
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 1373780 - 1373956
Alignment:
| Q |
1 |
cattgaccagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgagaccgagg-----tattacttgca |
95 |
Q |
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| T |
1373780 |
cattgaccagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgagaccgaggtctaatattacttgca |
1373879 |
T |
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| Q |
96 |
atatcttctcaatatatataatcgttgttttgtcgtggccaaggccacagtcacaaatttgtatttaaaaccctttt |
172 |
Q |
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| T |
1373880 |
atatcttctcaatatttataatcgttgttttgtcacggccaaggtcacagtcacaaatttgtatttaaaaccctttt |
1373956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 1350487 - 1350571
Alignment:
| Q |
1 |
cattgaccagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgagaccgaggt |
85 |
Q |
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| T |
1350487 |
cattgaccagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggt |
1350571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 1384141 - 1384225
Alignment:
| Q |
1 |
cattgaccagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgagaccgaggt |
85 |
Q |
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| T |
1384141 |
cattgaccagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggt |
1384225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 1390246 - 1390330
Alignment:
| Q |
1 |
cattgaccagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgagaccgaggt |
85 |
Q |
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| T |
1390246 |
cattgaccagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggt |
1390330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 1394492 - 1394576
Alignment:
| Q |
1 |
cattgaccagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgagaccgaggt |
85 |
Q |
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| T |
1394492 |
cattgaccagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggt |
1394576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 1358393 - 1358477
Alignment:
| Q |
1 |
cattgaccagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgagaccgaggt |
85 |
Q |
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| T |
1358393 |
cattgaccagagaacaattggccaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggt |
1358477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 7009807 - 7009872
Alignment:
| Q |
12 |
gaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgag |
77 |
Q |
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| T |
7009807 |
gaacaattggctaaggaagtagaataccttatcaggaagggatgggttccttgtttggaatttgag |
7009872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 7006716 - 7006778
Alignment:
| Q |
15 |
caattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgag |
77 |
Q |
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| T |
7006716 |
caattggctaaggaagtagaataccttatcaggaagggatgggttccttgtttggaatttgag |
7006778 |
T |
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