View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20209_low_3 (Length: 797)
Name: NF20209_low_3
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_low_3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 687; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 13 - 784
Target Start/End: Complemental strand, 45520216 - 45519449
Alignment:
| Q |
13 |
gcaccaacaaccgtcgtccctccgtgacattctgtttgacgccgtaaccgtcttgaagacaatggcctaactcacgaagcgcgtcgatatggccgagaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45520216 |
gcaccaacaaccgtcgtccctccgtgacattctgtttgacgccgtaaccgtcttgaagacaatggcctaactcacgaagcgcgtcgatatggccgagaag |
45520117 |
T |
|
| Q |
113 |
tgacgcgcgtgcagaaagtgctactccagcacgtagatctttgtcttgtttagtgcctccgcttccgttgaactgaattaccgcgagtgagtatagcgcc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45520116 |
tgacgcgcgtgcagaaagtgctactccagcacgtagatctttgtcttgtttagtgcctccgcttccgttgaactgaattaccgcgagtgagtatagcgcc |
45520017 |
T |
|
| Q |
213 |
ggcgcgtgtaacttcatcgccgccttggctattagagatactccacttcttcgatttcgtagacagtaaaatcggatctattccaagaaaaaataacaaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45520016 |
ggcgcgtgtaacttcatcgccgccttggctattagagatactccacttcttcgatttcgtagacagtaaaatcggatctattccaagaaaaaataacaaa |
45519917 |
T |
|
| Q |
313 |
caaatgaataaataatgattagttattttttattttcattttctaaacccagaaagnnnnnnnnnnnnnnnngtgactgaccattccaagagtataacaa |
412 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
45519916 |
caaatgaataaataatgattatttattttttattttcattttctaaacccagaaa----------aaaaaaagtgactgaccattccaagagtataacaa |
45519827 |
T |
|
| Q |
413 |
gcatcgacgttaccgacgttaacacagcgtttaagaaaatggtgagagttctcagaccagtttttgggcttaacggcgagtacttttgacccagctttcg |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
45519826 |
gcatcgacgttaccgacgttaacacagcgtttaagaaaatggtgagagttctcagaccagtttttgggcttaacggcgagtacttttggcccagctttcg |
45519727 |
T |
|
| Q |
513 |
ataaaaccataggatgaaaacccaaacggttcagtctcttgcatctgtgttaaataaaataatgaatatgaaaaggaatgaaatgggttttgttttgtta |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45519726 |
ataaaaccataggatgaaaacccaaacggttcagtctcttgcatctgtgttacataaaataatgaatatgaaaaggaatgaaatgggttttgttttgtta |
45519627 |
T |
|
| Q |
613 |
ggg------agaagaagaaagaacttacgttaaaagggtgttaaagaaatgggaaggagaagaggcagtagagctgagcttggtgaggataaagacgacg |
706 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45519626 |
gggagaagaagaagaagaaagaacttacgttaaaagggtgttaaagaaatgggaaggagaagaggcagtagagctgagcttggtgaggataaagacgacg |
45519527 |
T |
|
| Q |
707 |
atatcatcgggaaaatcttcaaagaagtcttgattgtgattcttcttgtgtgggtgtttcattggtcttctcatgatg |
784 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45519526 |
atatcatcgggaaaatcttcaaagaagtcttgattgtgattcttcttgtgtgggtgtttcattggtcttctcatgatg |
45519449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 673; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 15 - 784
Target Start/End: Original strand, 19634540 - 19635309
Alignment:
| Q |
15 |
accaacaaccgtcgtccctccgtgacattctgtttgacgccgtaaccgtcttgaagacaatggcctaactcacgaagcgcgtcgatatggccgagaagtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19634540 |
accaacaaccgtcgtccctccgtgacattctgtttgacgccgtaaccgtcttgaagacaatggcctaactcacgaagcgcgtcgatatggccgagaagtg |
19634639 |
T |
|
| Q |
115 |
acgcgcgtgcagaaagtgctactccagcacgtagatctttgtcttgtttagtgcctccgcttccgttgaactgaattaccgcgagtgagtatagcgccgg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19634640 |
acgcgcgtgcagaaagtgctactccagcacgtagatctttgtcttgtttagtgcctccgcttccgttgaactgaattaccgcgagtgagtatagcgccgg |
19634739 |
T |
|
| Q |
215 |
cgcgtgtaacttcatcgccgccttggctattagagatactccacttcttcgatttcgtagacagtaaaatcggatctattccaagaaaaaataacaaaca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19634740 |
cgcgtgtaacttcatcgccgccttggctattagagatactccacttcttcgatttcgtagacagtaaaatcggatctattccaagaaaaaataacaaaca |
19634839 |
T |
|
| Q |
315 |
aatgaataaataatgattagttattttttattttcattttctaaacccagaaagnnnnnnnnnnnnnnnngtgactgaccattccaagagtataacaagc |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
19634840 |
aatgaataaataatgattagttattttttattttcattttctaaacccagaaa------------aaaaagtgactgaccattccaagagtataacaagc |
19634927 |
T |
|
| Q |
415 |
atcgacgttaccgacgttaacacagcgtttaagaaaatggtgagagttctcagaccagtttttgggcttaacggcgagtacttttgacccagctttcgat |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
19634928 |
atcgacgttaccgacgttaacacagcgtttaagaaaatggtgagagttctcagaccagtttttgggcttaatggcgagtacttttgggccagctttcgat |
19635027 |
T |
|
| Q |
515 |
aaaaccataggatgaaaacccaaacggttcagtctcttgcatctgtgttaaataaaataatgaatatgaaaaggaatgaaatgggttttgttttgttagg |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19635028 |
aaaaccataggatgaaaacccaaacggttcagtctcttgcatctgtgttaaataaaataatgaatatgaaaaggaatgaaatgggttttgttttgttagg |
19635127 |
T |
|
| Q |
615 |
g------------agaagaagaaagaacttacgttaaaagggtgttaaagaaatgggaaggagaagaggcagtagagctgagcttggtgaggataaagac |
702 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19635128 |
gagaagaagaagaagaagaagaaagaacttacgttaaaagggtgttaaagaaatgggaaggagaagaggcagtagagctgagcttggtgaggataaagac |
19635227 |
T |
|
| Q |
703 |
gacgatatcatcgggaaaatcttcaaagaagtcttgattgtgattcttcttgtgtgggtgtttcattggtcttctcatgatg |
784 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19635228 |
gacgatatcatcgggaaaatcttcaaagaagtcttgattgtgattcttcttgtgtgggtgtttcattggtcttctcatgatg |
19635309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 15 - 784
Target Start/End: Original strand, 19833131 - 19833902
Alignment:
| Q |
15 |
accaacaaccgtcgtccctccgtgacattctgtttgacgccgtaaccgtcttgaagacaatggcctaactcacgaagcgcgtcgatatggccgagaagtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19833131 |
accaacaaccgtcgtccctccgtgacattctgtttgacgccgtaaccgtcttgaagacaatggcctaactcacgaagcgcgtcgatatggccgagaagtg |
19833230 |
T |
|
| Q |
115 |
acgcgcgtgcagaaagtgctactccagcacgtagatctttgtcttgtttagtgcctccgcttccgttgaactgaattaccgcgagtgagtatagcgccgg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19833231 |
acgcgcgtgcagaaagtgctactccagcacgtagatctttgtcttgtttagtgcctccgcttccgttgaactgaattaccgcgagtgagtatagcgccgg |
19833330 |
T |
|
| Q |
215 |
cgcgtgtaacttcatcgccgccttggctattagagatactccacttcttcgatttcgtagacagtaaaatcggatctattccaagaaaaaataacaaaca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19833331 |
cgcgtgtaacttcatcgccgccttggctattagagatactccacttcttcgatttcgtagacagtaaaatcggatctattccaagaaaaaataacaaaca |
19833430 |
T |
|
| Q |
315 |
aatgaataaataatgattagttattttttattttcattttctaaacccagaaagnnnnnnnnnnnnnnnngtgactgaccattccaagagtataacaagc |
414 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19833431 |
aatgaataaataatgattatttattttttattttcattttctaaacccagaaa----------aaaaaaagtgactgaccattccaagagtataacaagc |
19833520 |
T |
|
| Q |
415 |
atcgacgttaccgacgttaacacagcgtttaagaaaatggtgagagttctcagaccagtttttgggcttaacggcgagtacttttgacccagctttcgat |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19833521 |
atcgacgttaccgacgttaacacagcgtttaagaaaatggtgagagttctcagaccagtttttgggcttaacggcgagtacttttggcccagctttcgat |
19833620 |
T |
|
| Q |
515 |
aaaaccataggatgaaaacccaaacggttcagtctcttgcatctgtgttaaataaaataatgaatatgaaaaggaatgaaatgggttttgttttgttagg |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19833621 |
aaaaccataggatgaaaacccaaacggttcagtctcttgcatctgtgttacataaaataatgaatatgaaaaggaatgaaatgggttttgttttgttagg |
19833720 |
T |
|
| Q |
615 |
g------------agaagaagaaagaacttacgttaaaagggtgttaaagaaatgggaaggagaagaggcagtagagctgagcttggtgaggataaagac |
702 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19833721 |
gagaagaagaagaagaagaagaaagaacttacgttaaaagggtgttaaagaaatgggaaggagaagaggcagtagagctgagcttggtgaggataaagac |
19833820 |
T |
|
| Q |
703 |
gacgatatcatcgggaaaatcttcaaagaagtcttgattgtgattcttcttgtgtgggtgtttcattggtcttctcatgatg |
784 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19833821 |
gacgatatcatcgggaaaatcttcaaagaagtcttgattgtgattcttcttgtgtgggtgtttcattggtcttctcatgatg |
19833902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 34683615 - 34683702
Alignment:
| Q |
24 |
cgtcgtccctccgtgacattctgtttgacgccgtaaccgtcttgaagacaatggcctaactcacgaagcgcgtcgatatggccgagaa |
111 |
Q |
| |
|
|||| |||||| | || |||||| ||||| |||||||||||||| | ||| || || | ||||||||| |||||||| |||||||||| |
|
|
| T |
34683615 |
cgtcttccctcggcgatattctgcttgacaccgtaaccgtcttgtaaacagtgtccaagctcacgaagtgcgtcgatgtggccgagaa |
34683702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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