View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20209_low_4 (Length: 663)
Name: NF20209_low_4
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 610; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 1 - 646
Target Start/End: Complemental strand, 14596861 - 14596216
Alignment:
| Q |
1 |
tgctaagatgggccacaggttctgttgagattttcttctccaagaacaatgcattcctcgccagtaagcgcctaaaaattttacaacgtctcgcttacct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
14596861 |
tgctaagatgggccacaggttctgttgagattttcttctccaagaacaatgcattcctcgctagtaagcgcctaaaacttttacaacgtctcgcttacct |
14596762 |
T |
|
| Q |
101 |
caatgttggtgtctacccctttacctccatcctcctcattgtgtattgcttcctcccagcactctcattgttttccggatattttattgtgcaaacccta |
200 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14596761 |
caatgttggtgtctaccccttcacctccatcctcctcattgtgtattgcttcctcccagcactctcattgttttccggatattttattgtgcaaacccta |
14596662 |
T |
|
| Q |
201 |
agtatcgcctttttaatctacttgctcaccatgaccgtttgcttggtggggcttgccattcttgaggttaaatggtctggcatagagttagagcaatggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14596661 |
agtatcgcctttttaatctacttgctcaccatgaccgtgtgcttggtggggcttgccattcttgaggttaaatggtctggcatagagttagagcagtggt |
14596562 |
T |
|
| Q |
301 |
ggaggaatgaacaattttggctcatatccggcactagtgctcatctggctgctgtcatacaaggactccttaaagtgattgctggaattgagatttcttt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14596561 |
ggaggaatgaacaattttggctcatatccggcactagtgctcatctggctgctgtcatacaaggactccttaaagtgattgctggaattgagatttcttt |
14596462 |
T |
|
| Q |
401 |
tactttgacatctaaatcaggaggagaggatgacgatgacattttcgcagatttgtatatagtcaaatggagctccctaatgattccaccaattgttatc |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14596461 |
tactttgacatctaaatcaggaggagaggatgacgatgacattttcgcagatttgtatatagtcaaatggagctccctaatgattccaccaattgttatc |
14596362 |
T |
|
| Q |
501 |
gcaatggtaaatgtgattgccattgtggttgcattttctagaaccatttatagcgcaaacccacaatggagtaagtttataggtggagcattctttagcc |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
14596361 |
gcaatggtaaatgtgattgccattgtggttgcattttctagaaccatttatagcgcgaatccacaatggagtaagtttataggaggagcattctttagct |
14596262 |
T |
|
| Q |
601 |
tttgggttcttgcacatttgtatccatttgcaaaaggattgatggg |
646 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14596261 |
tttgggttcttgcacatttgtatccatttgcaaaaggattgatggg |
14596216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 646
Target Start/End: Original strand, 14611709 - 14612354
Alignment:
| Q |
1 |
tgctaagatgggccacaggttctgttgagattttcttctccaagaacaatgcattcctcgccagtaagcgcctaaaaattttacaacgtctcgcttacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || ||||| |
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| T |
14611709 |
tgctaagatgggccacaggttctgttgagattttcttctccaagaacaatgcattcctcgccagtaagcgcctaaaacttttacagcgtcttgcatacct |
14611808 |
T |
|
| Q |
101 |
caatgttggtgtctacccctttacctccatcctcctcattgtgtattgcttcctcccagcactctcattgttttccggatattttattgtgcaaacccta |
200 |
Q |
| |
|
||||||||| |||||||||| |||||| || ||||||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||||||||| |
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| T |
14611809 |
caatgttggaatctaccccttcacctccctcttcctcattgtgtattgctttctcccggcactctcattgttcactggatattttattgtgcaaaccctc |
14611908 |
T |
|
| Q |
201 |
agtatcgcctttttaatctacttgctcaccatgaccgtttgcttggtggggcttgccattcttgaggttaaatggtctggcatagagttagagcaatggt |
300 |
Q |
| |
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||| | ||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||| |||||||| ||||| || ||||||| |||||||||| |
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| T |
14611909 |
agtgttgcctttttaatctacttgctcctcatgaccgtgtgcttggtggcgcttgcaattctcgaggttaagtggtccggtgtagagttggagcaatggt |
14612008 |
T |
|
| Q |
301 |
ggaggaatgaacaattttggctcatatccggcactagtgctcatctggctgctgtcatacaaggactccttaaagtgattgctggaattgagatttcttt |
400 |
Q |
| |
|
|||| |||||||| ||||||||||| || ||||||||||||||| |||| ||||| ||||||||||| || ||||| || || || |||||||||||||| |
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|
| T |
14612009 |
ggagaaatgaacagttttggctcatttctggcactagtgctcatttggcagctgtgatacaaggactgctaaaagttatagcaggcattgagatttcttt |
14612108 |
T |
|
| Q |
401 |
tactttgacatctaaatcaggaggagaggatgacgatgacattttcgcagatttgtatatagtcaaatggagctccctaatgattccaccaattgttatc |
500 |
Q |
| |
|
|||||||||| | |||||||||||||| ||||| ||||| |||| |||||||||||||| |||||||||| ||| ||||||||||| |||||||| || |
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| T |
14612109 |
tactttgacaaccaaatcaggaggagaagatgatgatgatatttatgcagatttgtatattgtcaaatggacctctctaatgattcctccaattgtcatt |
14612208 |
T |
|
| Q |
501 |
gcaatggtaaatgtgattgccattgtggttgcattttctagaaccatttatagcgcaaacccacaatggagtaagtttataggtggagcattctttagcc |
600 |
Q |
| |
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|| |||||||||||||||||||||| |||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
14612209 |
gctatggtaaatgtgattgccattggggttgcgttttctagaacaatttatagtgcagttccacaatggagtaagtttataggaggagcattctttagtt |
14612308 |
T |
|
| Q |
601 |
tttgggttcttgcacatttgtatccatttgcaaaaggattgatggg |
646 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14612309 |
tttgggttcttgcacatttgtatccatttgcaaaaggattgatggg |
14612354 |
T |
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