View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20209_low_5 (Length: 613)
Name: NF20209_low_5
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 18 - 602
Target Start/End: Original strand, 45512715 - 45513299
Alignment:
| Q |
18 |
ctatgttcttgggttccatgggacgccttgagtatctctctctgtctcatgctcgtcttagcgggaggattcccaacagtctcagaaatctcaagaacct |
117 |
Q |
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| T |
45512715 |
ctatgttcttgggttccatgggacgccttgagtatctctctctgtctcatgctcgtcttagcgggaggattcccaacagtctcagaaatctcaagaacct |
45512814 |
T |
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| Q |
118 |
acaattccttgatctcagcttcaattactattaccttacgcaatttgaagagagagaattacaaatggatgacgacaccagttggatttcaaaccttcac |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45512815 |
acgattccttgatctcagcttcaattactattaccttacgcaatttgaagagagagaattacaaatggatgacggcaccagttggatttcaaaccttcac |
45512914 |
T |
|
| Q |
218 |
tcactcaaacaccttgacttgagtggtattcgtctcaatgacaagcgcaacttgttccaggtactcaatacacttccttctttattaaatctttcactgt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45512915 |
tcactcaaacaccttgacttgagtggtattcgtctcaatgacacgcgcaacttgttccaggtactcaatacacttccttctttattaaatctttcactgt |
45513014 |
T |
|
| Q |
318 |
ctggatgtagagttgacaattcactcattcctcgttatgctttccaaaacatgacatctcttatctatcttgatctctcatcaaatgagcttcatggtcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45513015 |
ctggatgtagagttgacaattcactcattcctcgttatgctttccaaaacatgacatctcttatctatcttgatctctcatcaaatgagcttcatggtcc |
45513114 |
T |
|
| Q |
418 |
gattcctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcacttctattccattatggttcagtcactttgagaaa |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45513115 |
gattcctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcacttctattccattatggttcggtcactttgagaaa |
45513214 |
T |
|
| Q |
518 |
cttacccttcttgacctttcttacaatgggctttatggtcaaatacctcatgctttcacgaacttgtcatccctggttcatctca |
602 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45513215 |
cttacccttcttgacctttcttataatgggctttatggtcaaatacctcatgctttcacgaacttgtcatccctggtgcatctca |
45513299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 401 - 501
Target Start/End: Original strand, 45513524 - 45513624
Alignment:
| Q |
401 |
aatgagcttcatggtccgattcctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcacttctattccattatggt |
500 |
Q |
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||||||||||||||||| ||||| | | |||| ||||||||||||| ||||||| || ||||||| ||||| ||| ||||| ||||||| ||||| |
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| T |
45513524 |
aatgagcttcatggtccaattccaggggtttttcgaaacatgacttcaattgaataccttagcctttctaaaaatagtttaacttcaattccatcatggt |
45513623 |
T |
|
| Q |
501 |
t |
501 |
Q |
| |
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| |
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|
| T |
45513624 |
t |
45513624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 22848844 - 22848797
Alignment:
| Q |
18 |
ctatgttcttgggttccatgggacgccttgagtatctctctctgtctc |
65 |
Q |
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|||||||| | |||||||||||||| ||||||||||||||||| |||| |
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| T |
22848844 |
ctatgttcgtaggttccatgggacgtcttgagtatctctctctctctc |
22848797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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